BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa

Repositories

• ChemRecSys
  Python 0 0 0 0 Updated Dec 10, 2020

• PGR-crowd

  A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing
  Python Apache-2.0 0 0 0 0 Updated Dec 3, 2020

• blah7

  Annotating a multilingual COVID-19-related corpus
  Apache-2.0 0 0 0 0 Updated Nov 26, 2020

• PGR

  A Silver Standard Corpus of Human Phenotype-Gene Relations
  Python Apache-2.0 2 5 0 0 Updated Nov 12, 2020

• SemanticSimDBcreator

  Semantic Similarity Database Creator
  Python 0 0 0 0 Updated Oct 27, 2020

• CANTEMIST-Participation

  Code relative to the participation of the lasigeBioTM team in the CANTEMIST-CANcer TExt Mining Shared Task – tumor named entity recognition.

  challenge coding ner normalization cantemist
  Python 0 1 0 0 Updated Oct 11, 2020

• REEL

  REEL: Relation Extraction for Entity Linking
  Python Apache-2.0 2 1 0 0 Updated Oct 11, 2020

• Multilingual-Biomedical-Pipeline-MESINESP

  Forked from Cobollero/Multilingual-Biomedical-Pipeline-MESINESP

  Developed solution by the LASIGE BioTM team for the first edition of BioASQ MESINESP task. It consists in the combination of X-BERT/X-Transformer, an Extreme Multi-Label Classification algorithm, with MER, a named entity recognition software.
  Python 1 0 0 0 Updated Sep 28, 2020

• DRecPy

  Forked from fabioiuri/DRecPy

  Deep Recommenders with Python: A Python library for building Deep Learning based Recommender Systems
  Python MIT 3 0 0 0 Updated Sep 8, 2020

• BiQA

  Generating Scientific Question Answering Corpora from Q&A forums
  Python 2 1 1 0 Updated Jul 28, 2020

• knowledge-extraction-from-CORD-19

  Knowledge extraction from CORD-19 (COVID-19 Open Research Dataset)
  Python 0 0 0 0 Updated Jul 10, 2020

• BiOnt

  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  Python Apache-2.0 3 10 0 0 Updated Jun 21, 2020

• merpy

  MER python interface
  Python Apache-2.0 0 3 2 0 Updated May 27, 2020

• DiShIn

  Semantic Similarity Measures using Disjunctive Shared Information
  Python Apache-2.0 2 10 0 0 Updated May 12, 2020

• MER

  Minimal Named-Entity Recognizer (MER)
  Shell 8 37 3 0 Updated May 11, 2020

• BLiR

  Biomarker Literature Retrieval
  TeX 1 1 0 0 Updated May 1, 2020

• blah6

  Annotation of Human Phenotype-Gene Relations - Improving Accessibility and Distinction between Negative Results in Biomedical Relation Extraction
  Python Apache-2.0 0 0 0 0 Updated Mar 19, 2020

• MultiNEL-corpus

  A multilingual silver standard corpus containing English, Portuguese and Spanish clinical case reports annotated with medical diagnostic codes
  Python 0 1 0 0 Updated Mar 9, 2020

• JaccardSimilarity

  Calculate the Jaccard Similarity Coefficient between two sets of terms based on their ancestors in an OBO ontology
  Shell Apache-2.0 0 0 0 0 Updated Dec 13, 2019

• BOLSTM

  Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies
  Python Apache-2.0 1 10 3 0 Updated Nov 5, 2019

• ICRel

  Identifying Cellular Relations
  Python MIT 1 6 0 0 Updated Oct 21, 2019

• PPRSSM

  PPR-SSM: Personalized PageRank and Semantic Similarity Measures for Entity Linking
  Java 1 2 0 0 Updated Oct 8, 2019

• CheRM

  Chemical Compounds Recommender Matrix
  Python 0 0 0 0 Updated Sep 10, 2019

• cARM

  create Astro Ratings Matrix
  Python 0 0 0 0 Updated Apr 3, 2019

• FunVar

  A Systematic Pipeline to Unravel the Convergence Patterns of Genetic Variants in Complex Diseases
  R 0 1 0 0 Updated Feb 5, 2019

• EvalRecSys

  Evaluating Recommender Systems
  Python 0 0 0 0 Updated Dec 12, 2018

• IBEnt

  Identifying Biomedical Entities
  Python MIT 3 1 0 0 Updated Nov 19, 2018

• CiTA

  Clinical Timeline Annotation (CiTA)
  Python MIT 0 0 0 0 Updated Nov 19, 2018

• IBRel

  Identifying Biomedical Relations
  Python MIT 0 4 2 0 Updated Nov 19, 2018

• IHP

  Identification of Human Phenotype Entities
  Python MIT 5 4 3 0 Updated Nov 2, 2018