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This is the code detailing the scallop web-browser.
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Network_code
contact
improve_dna_region
improve_downloads
improve_protein_centric
layout
scallop_dna_region
scallop_downloads
scallop_forest_plots
scallop_pathways
scallop_protein_centric
template
terms_of_use
www
.gitignore
2014-07-16 gene locations.rdata
2016-02-19_olink_improve_interface.Rproj
2016-02-19_server_setup.R
2016-02-22_protein_pos_data.rdata
2017-04-07_protein_pos_data.rdata
LICENSE
Olink_panel_IMPROVE_May_28th.txt
README.md
index.html
test
uifunctions.R

README.md

Scallop web-browser

This repository contains the code for the Scallop web-browser. Note, this is not the analysis code for the Scallop CVD1 projcet, which will be released on publication. This code merely runs the web-interface found at www.scallop-consortium.com/

Browsing interface

The browsing interface consists of cis, trans, and downloads sections - in folders named as dna_region, protein_centric and downloads, respectively. The data is derived from our 2017 pQTL study on the Improve cohort and current SCALLOP meta analysis, folders and modules marked accordingly. If in doubt, use the newer SCALLOP-data. The Improve data modules are kept for legacy reasons and data-conservation.

Network code

For historical/documentation purposes, the two network algorithms used and refered in the 2017 pQTL study can also be found in the folder Network_code. These are otherwise un-related to the scallop-project.

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