This repository contains the code for the Scallop web-browser. Note, this is not the analysis code for the Scallop CVD1 projcet, which will be released on publication. This code merely runs the web-interface found at www.scallop-consortium.com/
The browsing interface consists of cis, trans, and downloads sections - in folders named as dna_region, protein_centric and downloads, respectively. The data is derived from our 2017 pQTL study on the Improve cohort and current SCALLOP meta analysis, folders and modules marked accordingly. If in doubt, use the newer SCALLOP-data. The Improve data modules are kept for legacy reasons and data-conservation.
For historical/documentation purposes, the two network algorithms used and refered in the 2017 pQTL study can also be found in the folder Network_code. These are otherwise un-related to the scallop-project.