Deformable registration evaluation framework
C++ Tcl
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
data
src
testing
tools
BuildAndTest.bat.in
CMakeLists.txt
CTestConfig.cmake
README

README

Code has been tested with ITK 3.18.0 and VTK 5.6.0
on Windows XP and Windows 7 with Microsoft Visual Studio 2008.

FEM unit system: SI (mm) = mm - N - tonne (1000kg) - s - MPa (N/mm2) stress - mJ - tonne/mm3 density
(An alternative could be: SI = m - N - kg - s - Pa (N/m2) - J - kg/m3)

DefRegEval uses LPS coordinate system (according to ITK and DICOM standard).
If metaimages are opened in Slicer they are correctly converted to LPS.
To properly display STL files in Slicer an LPStoRAS transform shall be applied
on the model (-1 0 0 0; 0 -1 0 0; 0 0 1 0; 0 0 0 1).
LPS: ITK, DICOM, meta files, ITKSnap ITK
RAS: Slicer, NIFTI, ITKSnap NIFTI
AnatomicalOrientation tag (such as RAI) in meta files are ignored (they are
assumed to be LPS)

On Linux, tetgen segfaults if compiled in the Release mode.

___________________

How to cite

If you found this software useful please cite the following paper in your
related publications.

Andras Lasso, Shachar Avni, and Gabor Fichtinger:
Targeting Error Simulator for Image-guided Prostate Needle Placement.
Proc. of 32nd Annual International Conference of the
IEEE Engineering in Medicine and Biology Society (EMBC2010), pp. 5424-5427.
Buenos Aires, Argentina, 2010.

Full text of the paper is available here:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059718/