SARS-CoV-2 genomic epidemiology at a public university in the United States

This repository holds information related to our paper on SARS-CoV-2 genomic epidemiology in southeastern Michigan in Fall 2020. Below is a map of the repository structure.

Overview

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project
|- README          # The top level description of content.
|
|- data  
|  |- reference/  # Reference files: publicly available data on COVID-19 cases in Michigan and the University of Michigan. GISAID accessions used in this study.
|- scripts/       # Code for consensus genome assembly and core phylogenetic analyses.

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Notes

Consensus genome sequences used in this paper are available on GISAID, as listed in the supplemental tables.

Contact

If you have questions, please contact the Lauring Lab.