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<h2 itemprop="name">Leonardo Collado Torres</h2>
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<h1 id="l-collado-torres">L. Collado-Torres</h1>
<p>At the Lieber Institute for Brain Development, I am part of the Data Science team whose goals include better understanding and characterizing genomics signatures in the human brain. We use high-throughput technologies such as DNA methylation and RNA sequencing. I help mentor other team members, provide support for LIBD projects and I am advancing my academic career as part of <a href="http://aejaffe.com/" target="_blank">Andrew Jaffe</a>'s lab.</p>
<p>As a quick background, I graduated from the <a href="http://www.lcg.unam.mx/about" target="_blank">Undergraduate Program on Genomic Sciences</a> from the National Autonomous University of Mexico (<a href="http://unam.mx/" target="_blank">UNAM</a>) in 2009 and worked for two years at Winter Genomics analyzing high-throughput sequencing data. I then got a PhD in the <a href="http://www.jhsph.edu/departments/biostatistics/" target="_blank">Department of Biostatistics</a> at <a href="http://www.jhsph.edu/" target="_blank">Johns Hopkins Bloomberg School of Public Health</a> thanks to a <a href="http://www.conacyt.gob.mx/" target="_blank">CONACyT scholarship</a> awarded in 2011. I worked with <a href="http://jtleek.com/" target="_blank">Jeff Leek</a> and Andrew Jaffe in developing <a href="http://bioconductor.org/packages/derfinder" target="_blank">derfinder</a>, <a href="http://bioconductor.org/packages/regionReport" target="_blank">regionReport</a>, <a href="http://bioconductor.org/packages/recount" target="_blank">recount</a> as well as other applied projects.</p>
<p>Every day I use <a href="http://cran.r-project.org/" target="_blank">R</a> and <a href="http://www.bioconductor.org/" target="_blank">Bioconductor</a>. Occasionally I blog about them and other tools. I'm a co-founder of the <a href="http://LieberInstitute.github.io/rstatsclub/" target="_blank">LIBD rstats club</a> and the <a href="http://www.comunidadbioinfo.org" target="_blank">CDSBMexico</a> community of R and Bioconductor developers in Latin America.</p>
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<p class="course">PhD in Biostatistics, 2016</p>
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<h1>Selected Publications</h1>
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<p>&dagger; indicates corresponding author, <strong>*</strong> indicates equal contribution</p>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/bsp2/" itemprop="name">Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia</a>
<div itemprop="author">
<strong>Leonardo Collado-Torres</strong>, Emily E Burke, Amy Peterson, Joo Heon Shin, Richard E Straub, Anandita Rajpurohit, Stephen A Semick, William S Ulrich, BrainSeq Consortium, Cristian Valencia, Ran Tao, Amy Deep-Soboslay, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger &dagger;, Andrew E Jaffe &dagger;</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/26/426213.full.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/LieberInstitute/brainseq_phase2" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/26/426213" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/ncCSR/" itemprop="name">Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses</a>
<div itemprop="author">
Helena Kuri-Magaña, <strong>Leonardo Collado-Torres</strong>, Andrew E Jaffe, Humberto Valdovinos-Torres, Marbella Ovilla-Muñoz, Juan M Téllez-Sosa, Laura C Bonifaz-Alfonzo, Jesús Martínez-Barnetche</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/08/03/384172.full.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/08/03/384172" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/schizophrenia_DE/" itemprop="name">Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis</a>
<div itemprop="author">
Jaffe AE, Straub R, Shin JH, Tao R, Gao Y, <strong>Collado-Torres L</strong>, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich WS, Maher BJ, Deep-Soboslay A, The BrainSeq Consortium, Cross AJ, Brandon NJ, Leek JT, Hyde TM, Kleinman JE, Weinberger DR</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.nature.com/articles/s41593-018-0197-y.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://eqtl.brainseq.org/phase1/" target="_blank" rel="noopener">
Project
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://biorxiv.org/content/early/2017/04/05/124321" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/recountWorkflow/" itemprop="name">recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]</a>
<div itemprop="author">
<strong>L Collado-Torres</strong> &dagger;, A Nellore, AE Jaffe</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://f1000research.com/articles/6-1558/v1" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/LieberInstitute/recountWorkflow" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://bioconductor.org/help/workflows/" target="_blank" rel="noopener">
Bioconductor
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://LieberInstitute.github.io/recountWorkshop/" target="_blank" rel="noopener">
Bioc2017 workshop
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/recount/" itemprop="name">Reproducible RNA-seq analysis using recount2</a>
<div itemprop="author">
<strong>L Collado-Torres</strong> <strong>*</strong>, A Nellore <strong>*</strong>, K Kammers, SE Ellis, MA Taub, KD Hansen, AE Jaffe, B Langmead, JT Leek</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/leekgroup/recount-website" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://leekgroup.github.io/recount-analyses/" target="_blank" rel="noopener">
Project
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://bioconductor.org/packages/recount" target="_blank" rel="noopener">
Bioconductor
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://biorxiv.org/content/early/2016/08/08/068478" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/derfinder/" itemprop="name">Flexible expressed region analysis for RNA-seq with derfinder</a>
<div itemprop="author">
<strong>L Collado-Torres</strong>, A Nellore, AC Frazee, C Wilks, MI Love, B Langmead, RA Irizarry, JT Leek, AE Jaffe</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="http://nar.oxfordjournals.org/content/early/2016/09/29/nar.gkw852.full.pdf&#43;html" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/leekgroup/derSupplement" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://leekgroup.github.io/derSupplement/" target="_blank" rel="noopener">
Project
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://bioconductor.org/packages/derfinder" target="_blank" rel="noopener">
Bioconductor
</a>
<a class="btn btn-primary btn-outline btn-xs" href="http://biorxiv.org/content/early/2016/05/19/015370" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
</div>
</div>
</div>
</section>
<section id="publications" class="home-section">
<div class="container">
<div class="row">
<div class="col-xs-12 col-md-4 section-heading">
<h1>Recent Publications</h1>
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<a href="/publication/">
More Publications
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</a>
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<p>&dagger; indicates corresponding author, <strong>*</strong> indicates equal contribution</p>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/dnam_mcph_neuron_glia/" itemprop="name">Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation</a>
<div itemprop="author">
<strong>Amanda J. Price</strong> <strong>*</strong>, <strong>Leonardo Collado-Torres</strong> <strong>*</strong>, Nikolay A. Ivanov, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E Jaffe</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/29/428391.full.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/LieberInstitute/brain-epigenomics/" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/29/428391" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/dnam_alzheimer/" itemprop="name">Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer&#39;s disease</a>
<div itemprop="author">
Stephen A Semick, Rahul A Bharadwaj, <strong>Leonardo Collado-Torres</strong>, Ran Tao, Joo Heon Shin, Amy Deep-Soboslay, James Weiss, Daniel R Weinberger, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe &dagger;, Venkata S Mattay &dagger;</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/29/430603.full.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/LieberInstitute/Alzheimers_DNAm" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/29/430603" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/bsp2/" itemprop="name">Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia</a>
<div itemprop="author">
<strong>Leonardo Collado-Torres</strong>, Emily E Burke, Amy Peterson, Joo Heon Shin, Richard E Straub, Anandita Rajpurohit, Stephen A Semick, William S Ulrich, BrainSeq Consortium, Cristian Valencia, Ran Tao, Amy Deep-Soboslay, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger &dagger;, Andrew E Jaffe &dagger;</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/26/426213.full.pdf" target="_blank" rel="noopener">
PDF
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://github.com/LieberInstitute/brainseq_phase2" target="_blank" rel="noopener">
Code
</a>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/09/26/426213" target="_blank" rel="noopener">
Pre-print
</a>
</p>
</div>
<div class="pub-list-item" style="margin-bottom: 1rem" itemscope itemtype="http://schema.org/CreativeWork">
<i class="fa fa-file-text-o pub-icon" aria-hidden="true"></i>
<a href="http://lcolladotor.github.io/publication/maternalsmoking/" itemprop="name">Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome</a>
<div itemprop="author">
Semick SA, <strong>Collado-Torres L</strong>, Markunas CA, Shin JH, Deep-Soboslay A, Tao R, Huestis MA, Bierut LJ, Maher BS, Johnson EO, Hyde TM, Weinberger DR, Hancock DB, Kleinman JE &dagger;, Jaffe AE &dagger;</div>
<p>
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<div itemprop="author">
Helena Kuri-Magaña, <strong>Leonardo Collado-Torres</strong>, Andrew E Jaffe, Humberto Valdovinos-Torres, Marbella Ovilla-Muñoz, Juan M Téllez-Sosa, Laura C Bonifaz-Alfonzo, Jesús Martínez-Barnetche</div>
<p>
<a class="btn btn-primary btn-outline btn-xs" href="https://www.biorxiv.org/content/early/2018/08/03/384172.full.pdf" target="_blank" rel="noopener">
PDF
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<span itemprop="name"><a href="http://lcolladotor.github.io/talk/cdsbmexico2018/">From learning to using to teaching to developing R</a></span>
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<span itemprop="name"><a href="http://lcolladotor.github.io/talk/lcg2018/">Reproducible RNA-seq analysis with recount and recount-brain</a></span>
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LCG-UNAM 2018
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<p>Posts with the <a href="/categories/rstats/">rstats</a> category can also be found at <a href="https://www.r-bloggers.com" target="_blank">RBloggers</a>, <a href="https://rweekly.org/" target="_blank">R Weekly</a> and <a href="https://www.datacamp.com/community" target="_blank">DataCamp Community</a>. Also check the <a href="http://LieberInstitute.github.io/rstatsclub/" target="_blank">LIBD rstats club</a> where I am a contributor. You can also view posts grouped by <a href="categories" target="_blank">category</a> or <a href="tags" target="_blank">tag</a>.</p>
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Sat, Oct 20, 2018
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9 min read
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<a href="http://lcolladotor.github.io/2018/10/20/ashg18-tweet-summary-day-5/" itemprop="url">ASHG18 tweet summary day 5</a>
</h3>
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Continuing from my ASHG18 day 1 post, day 2, day 3 and day4 here’s my list of tweets from day 5.
6C 9:15 am Jane Loveland Wish that gene annotation was consistent across databases? Jane Loveland is speaking about the new #MANE project which aims to converge transcript annotation between @GencodeGenes and @NCBI RefSeq in 30 min 09:15-09:30, Room 6C, Talk 302 #ASHG18
&mdash; Ensembl (@ensembl) October 20, 2018 Jane Loveland: there are two comprehensive transcript annotations, RefSeq and Gencode.
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Fri, Oct 19, 2018
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<a href="http://lcolladotor.github.io/2018/10/19/ashg18-tweet-summary-day-4/#disqus_thread"></a>
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<h3 class="article-title" itemprop="headline">
<a href="http://lcolladotor.github.io/2018/10/19/ashg18-tweet-summary-day-4/" itemprop="url">ASHG18 tweet summary day 4</a>
</h3>
<div class="article-style" itemprop="articleBody">
Continuing from my ASHG18 day 1 post, day 2, day 3 here’s my list of tweets from day 4.
6F 11:00 am Cecilia Lingdren Got there at the end :P
Had #diversitymatters and many flags including the rainbow one in her last slide.
Benjamin Neale .@bmneale points out dimorphism in research participation - women more likely to participate (generally and in UK Biobank) and yet comparatively understudied #ASHG18
&mdash; Avery Davis Bell (@averydavisbell) October 19, 2018 In the sex dimorphism session, @bmneale points out that in UKBB (as is true for many studies) there are more women than men.
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Thu, Oct 18, 2018
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14 min read
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<a href="http://lcolladotor.github.io/2018/10/18/ashg18-tweet-summary-day-3/#disqus_thread"></a>
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<h3 class="article-title" itemprop="headline">
<a href="http://lcolladotor.github.io/2018/10/18/ashg18-tweet-summary-day-3/" itemprop="url">ASHG18 tweet summary day 3</a>
</h3>
<div class="article-style" itemprop="articleBody">
Continuing from my ASHG18 day 1 post and day 2, here’s my list of tweets from day 3.
9:15 20BC Jenna Carlson Jenna Carlson @PittPubHealth: Population-specific reference panels for genotype imputation, with Samoans as an example, in Room 20BC #ASHG18
&mdash; Kevin L. Keys (@_klkeys_) October 18, 2018 Jenna Carlson: creating population-specific reference panels for improved genotype imputation #ASHG18
&mdash; Charleston Chiang (@CharlestonCWKC) October 18, 2018 JC: Genotype chips cheap, useful for global health research.
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<h1>Curriculum vitae</h1>
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<p><a href="http://lcolladotor.github.io/cv/en_CV_lcollado.pdf" target="_blank">Download my cv</a> or view it at <a href="http://lcolladotor.github.io/cv/" target="_blank">GitHub</a>.</p>
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<p>Here you can find the students that I've mentored as their advisor and/or are currently working with me.</p>
<h1 id="libd">LIBD</h1>
<h2 id="2017-2018">2017-2018</h2>
<ul>
<li><a href="http://amy-peterson.github.io" target="_blank">Amy Peterson</a>, MPH practicum and MPH capstone.</li>
<li><a href="https://www.linkedin.com/in/ashkaun-razmara-bba6768a/" target="_blank">Ashkaun Razmara</a>, MPH practicum.</li>
</ul>
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<h1>Teaching</h1>
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<h1 id="libd">LIBD</h1>
<p><img class="image alignleft" src="images/LIBD.jpg" width="268" alt="" /></p>
<h2 id="2016">2016</h2>
<ol>
<li>Biostatistics and Stata instructor at a <a href="http://lcolladotor.github.io/kandahar" target="_blank">workshop for Kandahar University Faculty</a>, organized by Johns Hopkins University.</li>
<li>Invited instructor for the <a href="http://www.genomeeting.com/" target="_blank">Genomeeting 2016</a> course biostat INMEGEN, Mexico City, Mexico.</li>
</ol>
<h1 id="jhbsph">JHBSPH</h1>
<p><img class="image alignleft" src="images/hospital.jpg" width="268" height="200" alt="" /></p>
<h2 id="2015-2016">2015-2016</h2>
<ol>
<li>Teaching assistant and guest lecturer for <a href="http://www.aejaffe.com/summerR_2015/" target="_blank">Introduction to R for Public Health Researchers</a></li>
<li>Teaching assistant for Statistical Methods in Public Health <a href="http://www.biostat.jhsph.edu/courses/bio621/index.html" target="_blank">I (140.621)</a></li>
<li>Lead teaching assistant for Statistical Methods in Public Health <a href="http://www.biostat.jhsph.edu/courses/bio622/index.html" target="_blank">II (140.622)</a>.</li>
<li>Teaching assistant for the MPH capstone project.</li>
</ol>
<h2 id="2014-2015">2014-2015</h2>
<ol>
<li>Lead teaching assistant for Statistical Methods in Public Health <a href="http://www.biostat.jhsph.edu/courses/bio621/index.html" target="_blank">I (140.621)</a> and <a href="http://www.biostat.jhsph.edu/courses/bio622/index.html" target="_blank">II (140.622)</a>.</li>
<li>Teaching assistant for the MPH capstone project.</li>
</ol>
<h2 id="2013-2014">2013-2014</h2>
<ol>
<li>Teaching assistant for Statistical Methods in Public Health <a href="http://www.biostat.jhsph.edu/courses/bio621/index.html" target="_blank">I (140.621)</a> and <a href="http://www.biostat.jhsph.edu/courses/bio622/index.html" target="_blank">II (140.622)</a>.</li>
<li>Teaching assistant for the MPH capstone project. Developed a <a href="http://shiny.rstudio.com/" target="_blank">shiny</a> application that allows students to sign up for a TA session (<a href="https://github.com/lcolladotor/MPHcapstoneTA" target="_blank">code</a>) and wrote a report of the number of TA sessions available <a href="http://lcolladotor.github.io/mphtasessions/" target="_blank">here</a>.</li>
</ol>
<h2 id="2012-2013">2012-2013</h2>
<ol>
<li>Teaching assistant for Statistical Methods in Public Health <a href="http://www.biostat.jhsph.edu/courses/bio621/index.html" target="_blank">I (140.621)</a>, <a href="http://www.biostat.jhsph.edu/courses/bio622/index.html" target="_blank">II (140.622)</a>, <a href="http://www.biostat.jhsph.edu/courses/bio623/index.html" target="_blank">III (140.623)</a>, and <a href="http://www.biostat.jhsph.edu/courses/bio624/index.html" target="_blank">IV (140.624)</a> courses.</li>
</ol>
<h1 id="unam">UNAM</h1>
<p><img class="image alignleft" src="https://www.unam.mx/sites/default/files/images/boletines/negro_-290x277.jpg" width="277" alt="" /></p>
<h2 id="pdcb">PDCB</h2>
<p>While working at Winter Genomics I taught two courses for students of the Biomedical Sciences PhD Program (PDCB) from the National Autonomous University of Mexico (UNAM).</p>
<ol>
<li><a href="http://lcolladotor.github.io/courses/PDCB-HTS.html" target="_blank">Analysis of High-Throughput Sequencing data with Bioconductor</a> Aug-Dec 2010.</li>
<li><a href="http://lcolladotor.github.io/courses/PDCB-Biostats.html" target="_blank">Introduction to R and Biostatistics</a> (along with two other teachers).</li>
</ol>
<h2 id="ibt">IBT</h2>
<p>While I was at the Institute of Biotechnology (UNAM) working with the Winter Genomics crew I organized two courses. One was a series of various bioinformatics and biology mini-courses and another one involved members of different institutions.</p>
<ol>
<li><a href="http://lcolladotor.github.io/courses/mIntroR.html" target="_blank">Introduction to R for bench biologists</a> Oct-Nov 2009. This mini-course has quite a bit of material on learning how to make plots with R.</li>
<li><a href="http://lcolladotor.github.io/courses/MEyAdDG.html" target="_blank">Métodos Estadísticos y Analíticos de Datos Genómicos</a> (Statistical Methods and Analysis of Genomic Data) Jan 2010. This one week course had lectures about Perl, using a Cluster, high-throughput technologies, R and Bioconductor, C, and biology overviews.</li>
</ol>
<h2 id="lcg">LCG</h2>
<p>I taught three courses during my undergrad stage at the Undergraduate Program on Genomic Sciences (LCG). Each of these courses has its own website organizing the material. These are:</p>
<ol>
<li><a href="http://www.lcg.unam.mx/~lcollado/R/" target="_blank">Intensive course on R/Bioconductor</a> Oct-Nov 2008 (<a href="http://lcolladotor.github.io/courses/Courses/R/" target="_blank">backup</a>)</li>
<li><a href="http://www.lcg.unam.mx/~lcollado/E/" target="_blank">Principles of Statistics</a> Feb-June 2009 (<a href="http://lcolladotor.github.io/courses/Courses/E/" target="_blank">backup</a>)</li>
<li><a href="http://www.lcg.unam.mx/~lcollado/B/" target="_blank">Seminar III: R/Bioconductor</a> Aug-Dec 2009 (<a href="http://lcolladotor.github.io/courses/Courses/B/" target="_blank">backup</a>)</li>
</ol>
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<p>If you have questions about the Bioconductor packages I maintain, please read <a href="http://lcolladotor.github.io/2017/03/06/How-to-ask-for-help-for-Bioconductor-packages/#.WL3NQBIrJoM" target="_blank">this post</a>. If you send me an email, I'll simply refer you to the same post.</p>
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