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docker/Dockerfile
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@@ -25,9 +25,6 @@ RUN apt-get -y install build-essential \ |
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RUN apt-get -y install build-essential cmake |
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################# |
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## Install PRANK |
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FROM base as prank |
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@@ -41,7 +38,8 @@ RUN git clone https://github.com/ariloytynoja/prank-msa.git && cd prank-msa/src |
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FROM base as phyml |
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WORKDIR /opt |
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RUN git clone https://github.com/stephaneguindon/phyml && cd phyml && sh ./autogen.sh && ./configure --enable-phyml && make |
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##RUN git clone https://github.com/stephaneguindon/phyml && cd phyml && sh ./autogen.sh && ./configure --enable-phyml && make |
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RUN apt-get -y install phyml |
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################# |
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@@ -161,7 +159,7 @@ ENV PATH /opt/mafft/bin/:/opt/mafft/lib/:$PATH |
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# |
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COPY --from=phyml /opt/phyml/src/phyml /opt/bin/phyml |
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COPY --from=phyml /usr/lib/phyml/bin/phyml /opt/bin/phyml |
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COPY --from=treerecs /opt/Treerecs /opt/treerecs |
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