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phyml from apt repo

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lgueguen committed Feb 22, 2021
1 parent ffe2fb5 commit 80caa9b3e3d98df8e5625245ffba694fa809fec5
Showing with 3 additions and 5 deletions.
  1. +3 −5 docker/Dockerfile
@@ -25,9 +25,6 @@ RUN apt-get -y install build-essential \
RUN apt-get -y install build-essential cmake





#################
## Install PRANK
FROM base as prank
@@ -41,7 +38,8 @@ RUN git clone https://github.com/ariloytynoja/prank-msa.git && cd prank-msa/src
FROM base as phyml
WORKDIR /opt

RUN git clone https://github.com/stephaneguindon/phyml && cd phyml && sh ./autogen.sh && ./configure --enable-phyml && make
##RUN git clone https://github.com/stephaneguindon/phyml && cd phyml && sh ./autogen.sh && ./configure --enable-phyml && make
RUN apt-get -y install phyml


#################
@@ -161,7 +159,7 @@ ENV PATH /opt/mafft/bin/:/opt/mafft/lib/:$PATH
#


COPY --from=phyml /opt/phyml/src/phyml /opt/bin/phyml
COPY --from=phyml /usr/lib/phyml/bin/phyml /opt/bin/phyml


COPY --from=treerecs /opt/Treerecs /opt/treerecs

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