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a web server that "speaks for the (phylogenetic) trees"
CViT based tool for visualising VCF files.
Django CMS www.LegumeFederation.org
Visualization and Organization for Assembly and Annotation Data
Custom post-processing routines, refactored for gradle under InterMine v2.
Legume Federation data sources; refactored for gradle in InterMine v2.
legacy v1.legumefederation.org site
Common repo for webapps/src code shared amongst all LegFed mines
The webapp/resources/webapp/model files all in one groovy place
LegFed development repository for Tripal Blast. For official releases & documentation go to drupal.org
Legume Federation Data Store web UI (h5ai) at https://v1.legumefederation.org/data
Data files used for loading non-chado data into the mines
Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).
Common SQL used to update IM records from chado import
A vehicle for queue-backed web services
A repository for managing tasks relating to the production of gene families for use by the Legume Federation
Modifications of bio/core routines, punch them in manually
A repository for resources and task management relating to workshops hosted for the project
A mine for narrow-leafed lupin (Lupinus angustifolius) sourced from only CyVerse data store files
issues pertaining to the project website
A high-level Java API for retrieving, adding, updating and deleting CoGe data via its REST API. Uses Resty.
Repo for tracking issues on LegFed interface and usability
Planning for meeting talks and posters
consistency and other filter properties in gene families
Tracking activities related to interfacing with other groups (primarily users and non-funded federation members)
Code and issues around federation
Handling of traits within Legume Federation software components, and recommendations to data curators.