Perl bioinformatics exercises
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Perl bioinformatics exercises

Copyright 2011 Lenna X. Peterson attempts to guess whether a sequence is DNA or RNA. It depends on

The following files have sample input and output located in data/: reads a multi-record FASTA file and outputs a list of sequence names and lengths. reads a FASTA file and outputs the 6 possible translations (3 reading frames, forward and reverse complement). reads a PDB file of a molecule complexed with ADP and outputs a list of every atom within 6 angstroms of the ADP. calls a package that finds the most hydrophobic sequences in a protein. It depends on and

Another project around the same time used CGI to perform batch BLAST searches of a given sequence against multiple genomes. However, it was a group project so I lack authorization to upload it to github.