diff --git a/CHANGELOG b/CHANGELOG index 2fba3ce1..a2b2d3cd 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,11 +1,12 @@ -4.6.2rc1 --------- +4.6.2 +----- - :py:func:`pyteomics.fasta.write` can now write entries with parsed sequences (`#120 `_ by Vladimir Gorshkov, Joshua Klein and Lev Levitsky). - Fix `#110 `_. - Fix import issue with :py:mod:`pyteomics.pylab_aux`. + 4.6.1 ----- @@ -16,6 +17,7 @@ - Remove :py:class:`auxiliary.Version`. :py:class:`pyteomics.version.VersionInfo` can be used instead. - For target-decoy calculations, :py:mod:`pandas` is assumed to be 0.17 or newer. + 4.6 --- @@ -45,6 +47,7 @@ and `read_resolutions` to disable parsing, and `convert_arrays` to govern the creation of NumPy arrays (and masked arrays). + 4.5.6 ----- @@ -58,11 +61,13 @@ - Update :py:func:`pyteomics.pylab_aux.annotate_spectrum` for compatibility with latest :py:mod:`spectrum_utils`. Pyteomics is now compatible with :py:mod:`spectrum_utils` 0.4.0 and newer. + 4.5.5 ----- - Fix issue #77. + 4.5.4 ----- @@ -72,6 +77,7 @@ - Provide more accurate amino acid masses in :py:data:`mass.std_aa_mass`. - Fix SyntaxError in :py:mod:`pyteomics.pylab_aux` on Python 2.7. + 4.5.3 ----- @@ -84,11 +90,13 @@ Charge is now only handled in :py:meth:`Composition.mass` and not :py:meth:`Composition.__init__`. - Bugfix in :py:mod:`pyteomics.tandem` (`#71 `_ by @superrino130). + 4.5.2 ----- - Support Python 3.10. + 4.5.1 ----- @@ -100,6 +108,7 @@ - Bugfixes (`#63 `_ and `#64 `_ by Joshua Klein). + 4.5 --- @@ -164,6 +173,7 @@ - Fix compatibility with :py:mod:`SQLAlchemy` 1.4 (`#32 `_ by Joshua Klein). + 4.4.1 ----- @@ -178,6 +188,7 @@ - Also, check out the `Pyteomics Discussions page `_! You can use it to share your thoughts, ask questions, discuss coding practices, etc. + 4.4 --- @@ -216,16 +227,19 @@ To avoid all of this, you are encouraged to instantiate parser classes directly, or explicitly specify `use_index` to :py:func:`read` in all corner cases. + 4.3.2 ----- Fix `#7 `_. + 4.3.1 ----- Technical release. + 4.3 --- @@ -240,6 +254,7 @@ Changes in this release: - Fix `#3 `_, `#5 `_, and some issues in :py:mod:`tandem`. + 4.2 --- @@ -283,6 +298,7 @@ Changes in this release: Bugfix: fix the standard mass value for pyrrolysine (issue #42). + 4.1.1 ----- @@ -298,6 +314,7 @@ API changes - In :py:func:`ms1.read` and :py:func:`ms2.read`, the default value for `use_index` is now :py:const:`False`. Using the indexed parsers may result in incorrect behavior if the "first" scan number in S-lines is not unique. + 4.1 --- @@ -321,6 +338,7 @@ API changes Fix issue `#35 `_ (incorrect order of deserialized offset indexes on older Python versions). + 4.0 --- @@ -407,6 +425,7 @@ Fix issue `#35