From ed722e58e1da014c6262fe18f7dee780358b5980 Mon Sep 17 00:00:00 2001 From: Nicholas Youngblut Date: Thu, 12 Sep 2019 16:02:36 +0200 Subject: [PATCH] added snakemake to travis --- .travis.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 0fc6efd..7b8efe2 100644 --- a/.travis.yml +++ b/.travis.yml @@ -14,10 +14,11 @@ before_install: - conda config --add channels bioconda install: - - conda install --yes python=$TRAVIS_PYTHON_VERSION tensorflow=1.10 keras tensorboard scikit-learn ipython pytest + - conda install --yes python=$TRAVIS_PYTHON_VERSION tensorflow=1.10 keras tensorboard scikit-learn ipython pytest snakemake - python setup.py build_ext --inplace - python setup.py build - python setup.py install script: - pytest + - snakemake --directory DeepMAsED-SM --snakefile DeepMAsED-SM/Snakefile -F --dryrun