R/Bioconductor tools for mass spectrometry-based proteomics
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README.md

R/Bioconductor tools for mass spectrometry-based proteomics

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Bioconductor conference, Stanford University, 26 July 2016

In this workshop, we will use R/Bioconductor packages to explore, process, visualise and understand mass spectrometry-based proteomics data, starting with raw data, and proceeding with identification and quantitation data, discussing some of their peculiarities compared to sequencing data along the way. The participants will gain a general overview of Bioconductor packages for mass spectrometry and proteomics, and learn how to navigate raw data and reconstruct quantitative data. The workshop is aimed at a beginner to intermediate level, such as, for example, seasoned R users who want to get started with mass spectrometry and proteomics, or proteomics practitioners who want to familiarise themselves with R and Bioconductor infrastructure.

Read the vignette online here.

To open the vignette

library("ProteomicsBioc2016Workshop")
bioc2016()

To run/experiment with the code in the vignette

file.edit(system.file("doc", "Bioc2016.R", package = "ProteomicsBioc2016Workshop"))