A General Framework for Quality Control Metrics
qcmetrics package provides a general framework to develope
quality control (QC) pipelines for any type of data that can be
R. The application of
qcmetrics can be summarised in
- Identify a set of quality metrics of interest and implement them
and their visualisation method into individual
- Bundles the
QcMetricitems into a
- Automatically generate reports in pdf of html using the
qcReportfunction using the
QcMetricsobject of step 2 as input.
- Optionally, reports can be customised.
- Wrap the above steps into a wrapper function or a new QC package for production use.
QC pipelines and packages will be described and disseminated through the wiki.
qcmetrics is a Bioconductor package and should in installed with
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("qcmetrics")