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  1. bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    C 435 260

  2. seqtk

    Toolkit for processing sequences in FASTA/Q formats

    C 320 113

  3. attractivechaos/klib

    A standalone and lightweight C library

    C 1.7k 234

  4. bioawk

    BWK awk modified for biological data

    C 207 51

  5. miniasm

    Ultrafast de novo assembly for long noisy reads (though having no consensus step)

    TeX 97 17

  6. psmc

    Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

    C 40 30

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Contribution activity First pull request First issue First repository Joined GitHub

July 2017

Created a pull request in samtools/htslib that received 3 comments

Work-around for CIGARs with >64k operations in BAM files

This PR implements the idea discussed in samtools/hts-specs#40. Tested on an example file on Mac.

+52 −7 • 3 comments

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