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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
C JavaScript Groff C++ Perl Shell

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.gitignore
COPYING
ChangeLog
Makefile
NEWS
QSufSort.c
QSufSort.h
README
bamlite.c
bamlite.h
bntseq.c
bntseq.h
bwa.1
bwape.c
bwape1.c
bwape2.c
bwape3.c
bwape4.c
bwapeio1.c
bwapese1.c
bwase.c
bwase.h
bwase1.c
bwase4.c
bwaseio1.c
bwaseqio.c
bwatpx.h
bwt.c
bwt.h
bwt_gen.c
bwt_lite.c
bwt_lite.h
bwtaln.c
bwtaln.h
bwtgap.c
bwtgap.h
bwtindex.c
bwtio.c
bwtmisc.c
bwtsw2.h
bwtsw2_aux.c
bwtsw2_chain.c
bwtsw2_core.c
bwtsw2_main.c
bwtsw2_pair.c
cs2nt.c
fastmap.c
is.c
khash.h
kseq.h
ksort.h
kstring.c
kstring.h
ksw.c
ksw.h
kvec.h
main.c
main.h
qualfa2fq.pl
simple_dp.c
solid2fastq.pl
stdaln.c
stdaln.h
utils.c
utils.h
xa2multi.pl
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