From 78ce999c96756b677567e3069a5c6fc3962500fb Mon Sep 17 00:00:00 2001 From: Heng Li Date: Mon, 26 Oct 2020 11:45:09 -0400 Subject: [PATCH] Release minigraph-0.12 (r389) --- NEWS.md | 26 ++++++++++++++++++++++++++ minigraph.1 | 2 +- minigraph.h | 2 +- 3 files changed, 28 insertions(+), 2 deletions(-) diff --git a/NEWS.md b/NEWS.md index fe2d1d8..adbc059 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,29 @@ +Release 0.12-r389 (26 October 2020) +----------------------------------- + +Notable changes: + + * Improve alignments towards ends of graph segments. If there is an SV close to + the ends but not at the ends, older versions may produce an excessively + large bubble including high-identity matches. + + * Heuristically accelerates alignment in complex subgraphs by skipping + many unnecessary sequence-aware graph traversals. This speeds up graph + generation for CHM13 by three folds without obviously affecting accuracy. + + * Added option --inv to optionally disable inversions. Graph traversal is hard + with inversions. + + * Fixed the bug that prevents large -K. + + * Apply option -K4g to the asm preset. + + * Added option --write-mz to output the positions of minimizer anchors. + +(26 October 2020, r389) + + + Release 0.11-r371 (13 September 2020) ------------------------------------- diff --git a/minigraph.1 b/minigraph.1 index afc41a9..67fd5a9 100644 --- a/minigraph.1 +++ b/minigraph.1 @@ -1,4 +1,4 @@ -.TH minigraph 1 "23 October 2020" "minigraph-0.11-dirty (r381)" "Bioinformatics tools" +.TH minigraph 1 "26 October 2020" "minigraph-0.12 (r389)" "Bioinformatics tools" .SH NAME .PP diff --git a/minigraph.h b/minigraph.h index e814db0..997cbaf 100644 --- a/minigraph.h +++ b/minigraph.h @@ -4,7 +4,7 @@ #include #include "gfa.h" -#define MG_VERSION "0.11-r388-dirty" +#define MG_VERSION "0.12-r389" #define MG_M_SPLICE 0x10 #define MG_M_SR 0x20