A conglomeration of utilities that aren't project specific and use in my R day-to-day
Tidy up computational biology objects
Pedagogical machine learning exercises for NGS data
Smooth, find peaks and edges in 1D signal vectors.
An R interface to "shotgun", a parallel lasso and sparse logistic regression solver written in C++
ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.
chromatin Variability Across Regions (of the genome!)
R Interface to the jQuery Plug-in DataTables
Data table backend for dplyr
C Library to work with fasta/q files
Extensions to Bioconductor GenomicFeatures package. Primarily, this implements a more "Gene Centric" view on the world, as opposed to base GenomicFeature's transcript/exon/cds centric view.
Extensions to Gviz
Complex, interactive heatmaps in R
Utility that enables sending file attachments to MoinMoin wikis from the command line
A clean slate for my .emacs.d confs
Run commands against your Papers2 database from the command line
R for data science
R interface to Bokeh http://hafen.github.io/rbokeh/
Three.js widgets for R and shiny
Eases some of the pain when using Sublime Text 2 to code in R
SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles
Utilities to deal with sequencing data
A more R-idiomatic wrapper to the shogun toolbox.
Main repository for STAT 545 @ University of British Columbia, a course in data wrangling, exploration, and analysis with R.
Analysis of tag based high-throughput sequencing protocols
TrelliscopeJS R Package