Automatically exported from code.google.com/p/sigseeker
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
MANUAL
README.md
SIG_CORR_PIPELINE_3D.pl
SigSeeker.pm
benchmark_cmd.pl
benchmarking.pl
convertmulti2bed.pl
correlate.pl
expression_analysis.pl
overlap_analysis.pl
peakcalling_pipeline.pl
peakfiltering.pl
updated_intersectbed.pl

README.md

Supporting Perl scripts for the SigSeeker analysis platform

The benchmarking data compiled for the SigSeeker Bioinformatics paper 2017 was produced using benchmark_cmd.pl and benchmarking.pl

The intersection of peak calling results for the ensemble is generated using updated_intersectbed.pl and SIG_CORR_PIPELINE_3D.pl

The file is called in the following fashion: perl updated_intersectbed.pl [Input File 1] [Input File 2 ... Input File n] [Minimum Overlap in Basepairs] [Quantitative Threshold in Percent] [Output Filename] [ID]