diff --git a/README.textile b/README.textile
index 25338a2..24dc571 100644
--- a/README.textile
+++ b/README.textile
@@ -30,6 +30,10 @@ h2. Quick start
 # Run @cljr repl@ or @cljr swingrepl@ to launch a REPL configured for all the installed packages.
 
 
+You can also use the executable jar, cljr.jar, installed in ~/.cljr to run commands:
+* @java -jar ~/.cljr/cljr.jar list@
+* @java -jar ~/.cljr/cljr.jar repl@
+
 
 h2. Documentation
 
@@ -98,9 +102,9 @@ and either double-click on the jar file to run it from the command line:
 *Alternative installation directories*
 You can provide alternative CLJR_HOME and USER_HOME directories by passing them as properties to the above java command. 
 
-For instance, the following command creates the @.cljr@ and Maven @.m2@ directories under @C:\@ on a Windows box (something I had to do since Windows had problems with my shared home under VMWare, \\vmware-host\...).
+For instance, the following command creates the @.cljr@ and Maven @.m2@ directories under @C:@ on a Windows box (something I had to do since Windows had problems with my shared home under VMWare, \\vmware-host\...).
 
-@java -Duser.home=C:\ -jar cljr-installer.jar@
+@java -Duser.home=C: -jar cljr-installer.jar@
 
 
 *cljr scripts*
diff --git a/installer/project.clj b/installer/project.clj
index 2308d43..fbcb902 100644
--- a/installer/project.clj
+++ b/installer/project.clj
@@ -3,4 +3,4 @@
   :dependencies [[cljr "1.0.0-SNAPSHOT"]]
 ;  :jar-name "cljr-only.jar" ; name of the jar produced by 'lein jar'
 ;  :uberjar-name "cljr-installer.jar" ; as above for uberjar
-  :main cljr.installer)
+  :main cljr.repl)
diff --git a/installer/src/cljr/installer.clj b/installer/src/cljr/repl.clj
similarity index 83%
rename from installer/src/cljr/installer.clj
rename to installer/src/cljr/repl.clj
index 56a82f7..b891569 100644
--- a/installer/src/cljr/installer.clj
+++ b/installer/src/cljr/repl.clj
@@ -1,4 +1,4 @@
-(ns cljr.installer
+(ns cljr.repl
   (:require cljr.main)
   (:gen-class))
 
diff --git a/script/install b/script/install
index 0745acf..ff1e687 100755
--- a/script/install
+++ b/script/install
@@ -5,6 +5,6 @@ mvn install
 cd installer
 lein clean && lein deps && lein uberjar
 # for new version of lein
-#java -jar cljr-installer-1.0.0-SNAPSHOT-standalone.jar
+java -jar cljr-installer-1.0.0-SNAPSHOT-standalone.jar
 # for old version of lein
-java -jar cljr-installer-standalone.jar
+#java -jar cljr-installer-standalone.jar
diff --git a/src/main/resources/cljr/core.clj b/src/main/resources/cljr/core.clj
index d479ade..4d6b4a9 100644
--- a/src/main/resources/cljr/core.clj
+++ b/src/main/resources/cljr/core.clj
@@ -143,12 +143,17 @@
 	      (seq (.listFiles (file clojure-home)))))))
 
 
+(defn include-cljr-repo-jars? []
+  (not= "false" (System/getProperty "include.cljr.repo.jars")))
+
+
 (defn full-classpath []
   (let [cljr-repo (file (get-cljr-home) "lib")
 	additional-paths (get-classpath-urls (get-classpath-vector))
-	clojure-home-jars (get-clojure-home-jars)
-	jar-files nil ;;(seq (.listFiles cljr-repo))
-	]
+	clojure-home-jars (when (include-cljr-repo-jars?)
+			    (get-clojure-home-jars))
+	jar-files (when (include-cljr-repo-jars?)
+		    (seq (.listFiles cljr-repo)))]
     (filter identity (flatten (conj clojure-home-jars jar-files additional-paths)))))
 
 
diff --git a/src/main/resources/cljr/scripts.clj b/src/main/resources/cljr/scripts.clj
index b2a3291..fb2e857 100644
--- a/src/main/resources/cljr/scripts.clj
+++ b/src/main/resources/cljr/scripts.clj
@@ -14,33 +14,34 @@
 	  "CLJR_HOME=\"" (get-cljr-home) "\"\n" 
 	  "CLASSPATH=src" (cygwin-safe-path-sep) "test" (cygwin-safe-path-sep) ".\n\n"
 
-	  "   if [ ! -n \"$JVM_OPTS\" ]; then\n\n"
+	  "   if [ ! -n \"$JVM_OPTS\" ]; then\n"
 	  "      JVM_OPTS=\"-Xmx1G\"\n"
 	  "   fi\n\n"
 
-	  "   if [ \"$DISABLE_JLINE\" = \"true\" ]; then\n\n"
+	  "   if [ \"$DISABLE_JLINE\" = \"true\" ]; then\n"
 	  "      JLINE=\"\"\n"
 	  "   else\n"
 	  "      JLINE=\"jline.ConsoleRunner\"\n"
 	  "   fi\n\n"
 
-	  "if [ \"$1\" = \"repl\" -o \"$1\" = \"swingrepl\" -o \"$1\" = \"swank\" -o \"$1\" = \"run\" ]; then\n\n"
-	  "   if [ -n \"$CLOJURE_HOME\" ]; then\n\n"
+	  "if [ \"$1\" = \"repl\" -o \"$1\" = \"swingrepl\" -o \"$1\" = \"swank\" -o \"$1\" = \"run\" ]; then\n"
+	  "   if [ -n \"$CLOJURE_HOME\" ]; then\n"
 	  "      for f in \"$CLOJURE_HOME\"/*.jar; do\n"
-	  "         CLASSPATH=\"$CLASSPATH\"" (cygwin-safe-path-sep) "$f\n\n"
-	  "      done\n\n"
-	  "   fi\n\n"
+	  "         CLASSPATH=\"$CLASSPATH\"" (cygwin-safe-path-sep) "$f\n"
+	  "      done\n"
+	  "   fi\n"
 	  "   for f in \"$CLJR_HOME\"/lib/*.jar; do\n"
 	  "      CLASSPATH=\"$CLASSPATH\"" (cygwin-safe-path-sep) "$f\n"
 	  "   done\n\n"
-	  "else\n\n"
-	  "   CLASSPATH=\"$CLASSPATH\"" (cygwin-safe-path-sep) "\"$CLJR_HOME\"/cljr.jar\n\n"
-	  "fi\n\n"
 	  
-	  "if [ \"$1\" = \"repl\" ]; then\n"
-	  "   java $JVM_OPTS -Duser.home=\"$USER_HOME\" -Dclojure.home=\"$CLOJURE_HOME\" -Dcljr.home=\"$CLJR_HOME\" -cp \"$CLASSPATH\" $JLINE clojure.main -e \"(require 'cljr.main) (cljr.main/initialize-classpath)\" -r\n\n" 
-	  "else\n\n" 
-	  "    java $JVM_OPTS -Duser.home=\"$USER_HOME\" -Dclojure.home=\"$CLOJURE_HOME\" -Dcljr.home=\"$CLJR_HOME\" -cp \"$CLASSPATH\" cljr.App $*\n\n" 
+	  "   if [ \"$1\" = \"repl\" ]; then\n"
+	  "      java $JVM_OPTS -Dinclude.cljr.repo.jars=false -Duser.home=\"$USER_HOME\" -Dclojure.home=\"$CLOJURE_HOME\" -Dcljr.home=\"$CLJR_HOME\" -cp \"$CLASSPATH\" $JLINE clojure.main -e \"(require 'cljr.main) (cljr.main/initialize-classpath)\" -r\n"
+	  "   else\n"
+	  "      java $JVM_OPTS -Dinclude.cljr.repo.jars=false -Duser.home=\"$USER_HOME\" -Dclojure.home=\"$CLOJURE_HOME\" -Dcljr.home=\"$CLJR_HOME\" -cp \"$CLASSPATH\" cljr.App $*\n" 
+	  "   fi\n"
+	  "else\n"
+	  "   CLASSPATH=\"$CLASSPATH\"" (cygwin-safe-path-sep) "\"$CLJR_HOME\"/cljr.jar\n"
+	  "   java $JVM_OPTS -Duser.home=\"$USER_HOME\" -Dclojure.home=\"$CLOJURE_HOME\" -Dcljr.home=\"$CLJR_HOME\" -cp \"$CLASSPATH\" cljr.App $*\n" 
 	  "fi\n\n")))
 
 
@@ -88,7 +89,7 @@
      "goto EOF\r\n\r\n"
 
      ":LAUNCH\r\n"
-     "  java %JVM_OPTS% -Dcljr.home=" (get-cljr-home) " -Duser.home=" (get-user-home) " -Dclojure.home=%CLOJURE_HOME% -cp \"%CLASSPATH%\" cljr.App %*\r\n"
+     "  java %JVM_OPTS% -Dinclude.cljr.repo.jars=false -Dcljr.home=" (get-cljr-home) " -Duser.home=" (get-user-home) " -Dclojure.home=%CLOJURE_HOME% -cp \"%CLASSPATH%\" cljr.App %*\r\n"
      "goto EOF\r\n\r\n"
      
      ":EOF\r\n")))
\ No newline at end of file