@linnarsson-lab

Linnarsson Lab

Software developed by members of the Linnarsson lab at Karolinska Institutet

Pinned repositories

  1. BackSPIN

    Biclustering algorithm

    Python 36 12

  2. loompy

    Python implementation of the Loom file format - http://loompy.org

    Python 43 7

  • Python library to control the TC-720 temperature controller

    Python Updated Sep 24, 2018
  • Python implementation of the Loom file format - http://loompy.org

    Python 43 7 BSD-2-Clause Updated Sep 21, 2018
  • scVI

    Forked from YosefLab/scVI

    A deep generative model for gene expression profiles from single-cell RNA sequencing

    Python 20 MIT Updated Sep 12, 2018
  • Analysis of smFISH data

    Python 1 2 MIT Updated Aug 27, 2018
  • Analysis pipeline for the adolescent mouse nervous system project

    Jupyter Notebook 7 Updated Jun 28, 2018
  • Notebook to perform the clustering, region classification and spatial analysis of the osmFISH cortex dataset.

    Jupyter Notebook Updated Jun 19, 2018
  • Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format

    JavaScript 21 2 BSD-2-Clause Updated Jun 12, 2018
  • Algorithms for single-cell analysis

    Python 5 Updated Apr 19, 2018
  • Python control for the Dolomite Mitos P-pump, a pump used for microfluidic applications.

    Python 1 Updated Mar 15, 2018
  • Matlab BSD-2-Clause Updated Mar 12, 2018
  • Python implementation of mixtures of linear regressions.

    Python 2 Updated Jan 13, 2018
  • Biclustering algorithm

    Python 36 12 BSD-2-Clause Updated Dec 11, 2017
  • linnarsson lab C# code tree

    C# 2 Updated Nov 21, 2017
  • Scripts used for single-cell RNAseq analysis and RNAscope analysis of the Dorsal Horn project.

    Matlab 1 Updated Nov 13, 2017
  • Matlab code

    Matlab 3 Updated Nov 6, 2017
  • DEPRECATED Tools for manipulating cell expression format (CEF) files

    Go 10 4 BSD-2-Clause Updated Oct 10, 2017
  • Tools for fitting and evaluating finite mixtures of linear regressions for subsets

    Python 6 MIT Updated Aug 9, 2017
  • Demo page for flame maps

    JavaScript 1 Updated Aug 7, 2017
  • Algorithms for Bayesian Poisson factorization

    C++ 27 GPL-3.0 Updated Aug 1, 2017
  • A wrapper of cmdstan in python

    Python Updated Jul 6, 2017
  • Allen Brain Atlas utilities, parsers and data structures

    Jupyter Notebook 1 1 Updated Jun 25, 2017
  • Notebook and examples related to La Manno and Gyllborg et al. 2016

    Jupyter Notebook 5 5 Updated Mar 4, 2017
  • List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

    5 280 MIT Updated Sep 3, 2016
  • 0

    People

    This organization has no public members. You must be a member to see who’s a part of this organization.