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Python library to control the TC-720 temperature controller
Python implementation of the Loom file format - http://loompy.org
A deep generative model for gene expression profiles from single-cell RNA sequencing
Analysis of smFISH data
Analysis pipeline for the adolescent mouse nervous system project
Notebook to perform the clustering, region classification and spatial analysis of the osmFISH cortex dataset.
Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
Algorithms for single-cell analysis
Python control for the Dolomite Mitos P-pump, a pump used for microfluidic applications.
Python implementation of mixtures of linear regressions.
linnarsson lab C# code tree
Scripts used for single-cell RNAseq analysis and RNAscope analysis of the Dorsal Horn project.
DEPRECATED Tools for manipulating cell expression format (CEF) files
Tools for fitting and evaluating finite mixtures of linear regressions for subsets
Demo page for flame maps
Algorithms for Bayesian Poisson factorization
A wrapper of cmdstan in python
Allen Brain Atlas utilities, parsers and data structures
Notebook and examples related to La Manno and Gyllborg et al. 2016
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.