Simple Squiggle Pseudomapper
Simple demonstration and testbed of using spatial indexes (here kd-trees) to approximately map nanopore squiggle reads.
index_and_map.sh script provides a quick demonstration,
indexing the reference sequence of an ecoli strain and approximately
mapping 10 reads of older and newer nanopore reads to the reference.
Ideas are discussed on the Simpsonlab blog post, http://simpsonlab.github.io/2015/12/18/kdtree-mapping/