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Liam Keegan lkeegan

Scientific Software Developer, Scientific Software Center, Heidelberg University

13 followers · 17 following

University of Heidelberg
Heidelberg, Germany
https://www.keegan.ch

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spatial-model-editor/spatial-model-editor Public

Spatial bio-chemical reaction model editor and simulator

C++ 7 3
spatial-model-editor/sme-contrib Public

sme extras: plotting, animation, parameter fitting

Python
symengine Public

Forked from symengine/symengine

SymEngine is a fast symbolic manipulation library, written in C++

C++
spatial-model-editor/spatial-model-editor.github.io Public

Spatial Model Editor Website

Pug
ssciwr/jupyter-data-exploration Public

Data Exploration with Python and Jupyter [SSC Compact Course]

Jupyter Notebook 1
ssciwr/cpp-benchmarking Public

Performance benchmarking C++ applications [SSC Compact Course]

C++ 3

2,879 contributions in the last year

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Activity overview

Contributed to spatial-model-editor/spatial-model-editor, spatial-model-editor/spatial-model-editor.github.io, ssciwr/iwr-interactive-visualization and 69 other repositories

Contribution activity

May 2022

Created 180 commits in 12 repositories

Created a pull request in spatial-model-editor/spatial-model-editor that received 2 comments

May 13

add initial GUI interface to optimization functionality

MainWindow add Optimization to Tools menu: opens DialogOptimize add DialogOptimize main interface for running parameter optimization plot of f…

+3,151 −266 • 2 comments

Opened 24 other pull requests in 6 repositories

ssciwr/iwr-interactive-visualization 14 merged

rename Bock HansGeorg2 sw.tif to Bock_sw.tif to match filename in data.json May 13
make prof image a link to website May 13
copy any jpg/png images from src/img at build time May 11
remove console logging May 11
add linebreak after titles in prof names due to excessive length of titles in some cases May 11
transfer src/js/data.ts changes to src/data/data.json file May 11
add missing quote May 11
reduce effect of any inherited css settings when deploying May 6
add npm start command May 6
add npm run preview command May 6
add deploy docs to readme May 5
fileadmin/iwr_vis -> fileadmin/templates/iwr_vis May 5
read data as json from url on pageload May 5
fix mislabelled images May 4

ssciwr/mease-hpc-setup 3 merged

remove --cpus-per-gpu parameter from job submission May 17
update MUA-analysis docs May 6
add example of how to run ECE_Workflow on HPC May 5

ssciwr/mease-elabftw 3 merged

ssciwr/jupyter-data-exploration 2 merged

fragment -> subslide May 9
add more groupby examples May 9

SpikeInterface/spikeinterface 1 closed

use spike_train.size instead of len(spike_train) in RasterWidget May 3

ssciwr/mease-lab-to-nwb 1 merged

add elabftw data interface May 2

Created an issue in SpikeInterface/spikeinterface that received 8 comments

May 3

`plot_rasters` gives error if spike_train contains a single spike

TypeError Traceback (most recent call last) Input In [4], in <module> 1 fig, ax = plt.subplots(figsize=(24, 8)) ----> 2 w_rs = sw.plot_rasters(sort…

8 comments

Opened 21 other issues in 3 repositories

spatial-model-editor/spatial-model-editor 17 open 1 closed

add scaleFactor and epsilon to DialogOptCost May 19
mouseover help for Optimization dialogs May 19
optimization CLI interface May 19
optimization python interface May 19
disable logging in optimization / in general? May 19
Don't construct Optimization in GUI thread May 19
enable multithreaded optimization May 19
add non-trivial tests of DialogOptimize May 19
add tests of optimization with multiple OptCosts at different simulation times May 19
Optimization naming May 19
add feature box to website for optimization May 19
add optimization documentation May 19
export optimization results May 19
Save optimization settings to the model May 19
Add target images to DialogOptimize May 19
Preview image of target concentrations in DialogOptCost May 19
Improve dialog for editing target species concentrations / dcdts May 19
OptCost should have a time member May 16

ssciwr/iwr-interactive-visualization 2 closed

ssciwr/mease-elabftw 1 closed

add mock of get_nwb_metadata() May 2

17 contributions in private repositories May 2 – May 16