kgen

The kgen software provides functionality to efficiently compute inverses of genetic similarity matrices for partially observed multi-phenotype data. The source, manual and build instructions for kgen are provided in the Supplementary Material for the paper Kinship solutions for partially observed multi-phenotype data (published in the Journal of Computational Biology), and in this repository.

Files

• supmat.pdf - The Supplementary Material for the paper Kinship solutions for partially observed multi-phenotype data. This material includes additional information about the experiments, and also the kgen manual.
• kgen - A static ELF binary for the kgen software built with gcc 9.1.0 and a Xeon E5-2683 on CentOS 7.6.1810.
• Makefile - Build instructions for the kgen software.
• kgen.c and kgen.h - Source code for the kgen software. This source is released under the BSD 2-clause license (provided below), and this source makes use of the Intel MKL or netlib packages.
• libqrupdate.a - A static library for the libqrupdate package (by Jaroslav Hajek). This package is released under the GPLv2 license, and source code is available at sourceforge.

Changelog

• February 29th 2020 - kgen v1. Initial release. The flag -t is currently unimplemented.

License

kgen v1. Copyright (c) 2020. Lloyd T. Elliott.

Redistribution and use in source and binary forms, with or
without modification, are permitted provided that the
following conditions are met:

1. Redistributions of source code must retain the above
copyright notice, this  list of conditions and the
following disclaimer.

2. Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials
provided with the distribution.

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