diff --git a/clang-tools-extra/clangd/IncludeCleaner.cpp b/clang-tools-extra/clangd/IncludeCleaner.cpp
index 9708c67ca2883..b2c04ac4d5463 100644
--- a/clang-tools-extra/clangd/IncludeCleaner.cpp
+++ b/clang-tools-extra/clangd/IncludeCleaner.cpp
@@ -70,6 +70,8 @@ bool isIgnored(llvm::StringRef HeaderPath, HeaderFilter IgnoreHeaders) {
 bool mayConsiderUnused(
     const Inclusion &Inc, ParsedAST &AST,
     const include_cleaner::PragmaIncludes *PI) {
+  if (PI && PI->shouldKeep(Inc.HashLine + 1))
+      return false;
   // FIXME(kirillbobyrev): We currently do not support the umbrella headers.
   // System headers are likely to be standard library headers.
   // Until we have good support for umbrella headers, don't warn about them.
@@ -81,8 +83,6 @@ bool mayConsiderUnused(
       AST.getIncludeStructure().getRealPath(HID));
   assert(FE);
   if (PI) {
-    if (PI->shouldKeep(Inc.HashLine + 1))
-      return false;
     // Check if main file is the public interface for a private header. If so we
     // shouldn't diagnose it as unused.
     if (auto PHeader = PI->getPublic(*FE); !PHeader.empty()) {
diff --git a/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp b/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
index c55351fb1f91d..83a7c45df1695 100644
--- a/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
+++ b/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
@@ -76,6 +76,8 @@ TEST(IncludeCleaner, StdlibUnused) {
   auto TU = TestTU::withCode(R"cpp(
     #include <list>
     #include <queue>
+    #include <vector> // IWYU pragma: keep
+    #include <string> // IWYU pragma: export
     std::list<int> x;
   )cpp");
   // Layout of std library impl is not relevant.
@@ -84,10 +86,13 @@ TEST(IncludeCleaner, StdlibUnused) {
     namespace std {
       template <typename> class list {};
       template <typename> class queue {};
+      template <typename> class vector {};
     }
   )cpp";
   TU.AdditionalFiles["list"] = "#include <bits>";
   TU.AdditionalFiles["queue"] = "#include <bits>";
+  TU.AdditionalFiles["vector"] = "#include <bits>";
+  TU.AdditionalFiles["string"] = "#include <bits>";
   TU.ExtraArgs = {"-isystem", testRoot()};
   auto AST = TU.build();
   IncludeCleanerFindings Findings = computeIncludeCleanerFindings(AST);