diff --git a/clang-tools-extra/clangd/CompileCommands.cpp b/clang-tools-extra/clangd/CompileCommands.cpp
index f4e8e7e74a3be..1b4b24d59cb83 100644
--- a/clang-tools-extra/clangd/CompileCommands.cpp
+++ b/clang-tools-extra/clangd/CompileCommands.cpp
@@ -313,13 +313,15 @@ void CommandMangler::operator()(tooling::CompileCommand &Command,
 
   tooling::addTargetAndModeForProgramName(Cmd, Cmd.front());
 
-  // Check whether the flag exists, either as -flag or -flag=*
-  auto Has = [&](llvm::StringRef Flag) {
-    for (llvm::StringRef Arg : Cmd) {
-      if (Arg.consume_front(Flag) && (Arg.empty() || Arg[0] == '='))
-        return true;
-    }
-    return false;
+  // Check whether the flag exists in the command.
+  auto HasExact = [&](llvm::StringRef Flag) {
+    return llvm::any_of(Cmd, [&](llvm::StringRef Arg) { return Arg == Flag; });
+  };
+
+  // Check whether the flag appears in the command as a prefix.
+  auto HasPrefix = [&](llvm::StringRef Flag) {
+    return llvm::any_of(
+        Cmd, [&](llvm::StringRef Arg) { return Arg.startswith(Flag); });
   };
 
   llvm::erase_if(Cmd, [](llvm::StringRef Elem) {
@@ -327,12 +329,13 @@ void CommandMangler::operator()(tooling::CompileCommand &Command,
   });
 
   std::vector<std::string> ToAppend;
-  if (ResourceDir && !Has("-resource-dir"))
+  if (ResourceDir && !HasExact("-resource-dir") && !HasPrefix("-resource-dir="))
     ToAppend.push_back(("-resource-dir=" + *ResourceDir));
 
   // Don't set `-isysroot` if it is already set or if `--sysroot` is set.
   // `--sysroot` is a superset of the `-isysroot` argument.
-  if (Sysroot && !Has("-isysroot") && !Has("--sysroot")) {
+  if (Sysroot && !HasPrefix("-isysroot") && !HasExact("--sysroot") &&
+      !HasPrefix("--sysroot=")) {
     ToAppend.push_back("-isysroot");
     ToAppend.push_back(*Sysroot);
   }
@@ -343,7 +346,7 @@ void CommandMangler::operator()(tooling::CompileCommand &Command,
   }
 
   if (!Cmd.empty()) {
-    bool FollowSymlink = !Has("-no-canonical-prefixes");
+    bool FollowSymlink = !HasExact("-no-canonical-prefixes");
     Cmd.front() =
         (FollowSymlink ? ResolvedDrivers : ResolvedDriversNoFollow)
             .get(Cmd.front(), [&, this] {
diff --git a/clang-tools-extra/clangd/unittests/CompileCommandsTests.cpp b/clang-tools-extra/clangd/unittests/CompileCommandsTests.cpp
index 772177b60b5ee..b64dd4acad4c2 100644
--- a/clang-tools-extra/clangd/unittests/CompileCommandsTests.cpp
+++ b/clang-tools-extra/clangd/unittests/CompileCommandsTests.cpp
@@ -370,9 +370,8 @@ TEST(ArgStripperTest, OrderDependent) {
 }
 
 TEST(PrintArgvTest, All) {
-  std::vector<llvm::StringRef> Args = {
-      "one", "two", "thr ee", "f\"o\"ur", "fi\\ve", "$"
-  };
+  std::vector<llvm::StringRef> Args = {"one",      "two",    "thr ee",
+                                       "f\"o\"ur", "fi\\ve", "$"};
   const char *Expected = R"(one two "thr ee" "f\"o\"ur" "fi\\ve" $)";
   EXPECT_EQ(Expected, printArgv(Args));
 }
@@ -450,6 +449,82 @@ TEST(CommandMangler, PathsAsPositional) {
   Mangler(Cmd, "a.cc");
   EXPECT_THAT(Cmd.CommandLine, Contains("foo"));
 }
+
+TEST(CommandMangler, RespectsOriginalResourceDir) {
+  auto Mangler = CommandMangler::forTests();
+  Mangler.ResourceDir = testPath("fake/resources");
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "-resource-dir", testPath("true/resources"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("-resource-dir " + testPath("true/resources")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/resources"))));
+  }
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "-resource-dir=" + testPath("true/resources"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("-resource-dir=" + testPath("true/resources")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/resources"))));
+  }
+}
+
+TEST(CommandMangler, RespectsOriginalSysroot) {
+  auto Mangler = CommandMangler::forTests();
+  Mangler.Sysroot = testPath("fake/sysroot");
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "-isysroot", testPath("true/sysroot"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("-isysroot " + testPath("true/sysroot")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/sysroot"))));
+  }
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "-isysroot" + testPath("true/sysroot"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("-isysroot" + testPath("true/sysroot")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/sysroot"))));
+  }
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "--sysroot", testPath("true/sysroot"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("--sysroot " + testPath("true/sysroot")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/sysroot"))));
+  }
+
+  {
+    tooling::CompileCommand Cmd;
+    Cmd.CommandLine = {"clang++", "--sysroot=" + testPath("true/sysroot"),
+                       "foo.cc"};
+    Mangler(Cmd, "foo.cc");
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                HasSubstr("--sysroot=" + testPath("true/sysroot")));
+    EXPECT_THAT(llvm::join(Cmd.CommandLine, " "),
+                Not(HasSubstr(testPath("fake/sysroot"))));
+  }
+}
 } // namespace
 } // namespace clangd
 } // namespace clang