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aai-matrix is really slow #25
I can't re-open my issue about multithreading.
Unfortunately i can't read MiGA documentation. I see only the titles on the doc.
I was wondering how blast is called within aai.rb.
I want to add that I have launched AAI comparaison using aai-matrix. I have 35 genomes.
I'm pretty sure that parallel can perform well by parallelizing the loops. I tried to make it works but I have never used parallel before so I hoped for some help now.
This will be a great features for your tool.