New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Aln.convert.pl: XMFA -> FastA incomplete output #34

Open
yseif opened this Issue Jul 20, 2018 · 1 comment

Comments

Projects
None yet
2 participants
@yseif

yseif commented Jul 20, 2018

I'm using Aln.convert.pl to convert an XMFA file to a fasta format. In the process, a few sequences are removed and I end up with a smaller number of sequences than I started with. Is that normal?

@lmrodriguezr

This comment has been minimized.

Show comment
Hide comment
@lmrodriguezr

lmrodriguezr Aug 9, 2018

Owner

Hello @yseif
Aln.convert.pl is simply a wrapper for Bio::Perl, so I'm inclined to think it's probably an issue with the parent function rather than this script. However, if you post an example of an input file causing the issue I can take a look and try to resolve it.

Owner

lmrodriguezr commented Aug 9, 2018

Hello @yseif
Aln.convert.pl is simply a wrapper for Bio::Perl, so I'm inclined to think it's probably an issue with the parent function rather than this script. However, if you post an example of an input file causing the issue I can take a look and try to resolve it.

@lmrodriguezr lmrodriguezr changed the title from Aln.convert.pl to Aln.convert.pl: XMFA -> FastA incomplete output Aug 9, 2018

@lmrodriguezr lmrodriguezr self-assigned this Aug 9, 2018

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment