• Mechanism of Action Generation involving Network Analysis

    Python 1 1 GPL-3.0 Updated Jul 22, 2018
  • Python Updated Jul 19, 2018
  • JNK3 activation reaction model

    Jupyter Notebook Updated Jul 19, 2018
  • HypBuilder is software for the large scale construction of physicochemical models in the format of PySB.

    Python Updated Jul 19, 2018
  • Jupyter Notebook 2 1 Updated Jul 18, 2018
  • Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

    Jupyter Notebook 1 Updated Jul 10, 2018
  • analysis of earm using pydrone

    Python Updated Jun 20, 2018
  • Python code for parallel simulation of Logic models.

    Python 1 Updated Jun 8, 2018
  • pysb

    Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 2 40 BSD-2-Clause Updated Jun 7, 2018
  • Cytoscapejs visualization of pysb models

    Jupyter Notebook Updated May 22, 2018
  • segment polarity network

    Python Updated Apr 24, 2018
  • PySB tutorials and examples for IPython (Jupyter) notebook

    Jupyter Notebook 4 Updated Apr 12, 2018
  • Nested sampling based PySB model calibration.

    Python Updated Feb 28, 2018
  • Python 9 5 GPL-3.0 Updated Feb 24, 2018
  • Jupyter Notebook Updated Jan 29, 2018
  • A nested sampling algorithm for PySB model selection.

    Python GPL-3.0 Updated Dec 6, 2017
  • earm

    Forked from clopezx/earm

    EARM V2.0 FILES

    Python 15 Updated Nov 27, 2017
  • Scripts, templates, etc. for AWS

    Shell Updated Nov 16, 2017
  • Python 1 1 Updated Oct 29, 2017
  • New PySB website (beta version)

    CSS Updated Sep 27, 2017
  • Binding reactions of MMP2, TIMP2, and MT1-MMP

    Python Updated Sep 8, 2017
  • Python 1 Updated Jun 16, 2017
  • Python Updated Jun 7, 2017
  • Variance Based Sensitivity Analysis by the method of Saltelli

    Python 2 2 Updated Mar 14, 2017
  • COX2 Reaction Model

    Jupyter Notebook Updated Feb 28, 2017
  • OpenEdge ABL Updated Oct 12, 2016
  • For Incyte project and Melissa's data

    Python Updated Aug 16, 2016
  • A BioNetGen to PySB converter. Currently in development

    Python Updated Mar 17, 2016
  • pymc

    Forked from pymc-devs/pymc3

    PyMC version 3 (PyMC 2 is in branch 2.3)

    Python 2 857 Updated Jan 6, 2016
  • cupSODA is CUDA-powered coarse-grain deterministic simulator of mass-action kinetics models

    Cuda 2 Updated Oct 17, 2015
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