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@LoLab-VU

Lopez Lab at Vanderbilt University

Pinned

  1. pysb Public

    Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 5 8

  2. PyDREAM Public

    MT-DREAM(ZS) algorithm for model optimization, calibration, selection

    Python 44 28

  3. PyBILT Public

    Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

    Python 20 10

  4. simplePSO Public

    Particle Swarm Optimization algorithm in Python

    Python 11 4

  5. MAGINE Public

    Mechanism of Action Generation involving Network Analysis

    Jupyter Notebook 8 5

  6. pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Jupyter Notebook 25 4

Repositories

  • pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Jupyter Notebook 25 MIT 4 4 11 Updated Jul 25, 2022
  • NERM Public
    Jupyter Notebook 0 0 0 0 Updated Jul 25, 2022
  • Python 0 MIT 0 0 0 Updated Jul 6, 2022
  • MAGINE Public

    Mechanism of Action Generation involving Network Analysis

    Jupyter Notebook 8 GPL-3.0 5 0 2 Updated Jun 21, 2022
  • HypBuilder Public

    HypBuilder is software for the large scale construction of physicochemical models in the format of PySB.

    Python 2 0 0 0 Updated Jun 20, 2022
  • MAGINE_Supplement_notebooks Public

    Supplement notebooks to demonstrate MAGINE

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jun 13, 2022
  • pydyno Public

    Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

    Jupyter Notebook 8 1 6 5 Updated May 24, 2022
  • simplePSO Public

    Particle Swarm Optimization algorithm in Python

    Python 11 4 0 0 Updated Dec 3, 2021
  • pysb Public

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 5 BSD-2-Clause 61 11 0 Updated Nov 30, 2021
  • PyDREAM Public

    MT-DREAM(ZS) algorithm for model optimization, calibration, selection

    Python 44 GPL-3.0 28 9 3 Updated Sep 23, 2021

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