Skip to content
This repository

Wrapper of sambamba for Ruby programming language

branch: master

Fetching latest commit…

Octocat-spinner-32-eaf2f5

Cannot retrieve the latest commit at this time

Octocat-spinner-32 features
Octocat-spinner-32 lib
Octocat-spinner-32 test
Octocat-spinner-32 .document
Octocat-spinner-32 .gitignore
Octocat-spinner-32 .travis.yml
Octocat-spinner-32 Gemfile
Octocat-spinner-32 LICENSE.txt
Octocat-spinner-32 README.md
Octocat-spinner-32 Rakefile
Octocat-spinner-32 VERSION
README.md

bio-sambamba

Code Climate Build Status

Full description goes here

Note: this software is under active development!

Installation

    rake build
    rake install

In order to use the gem, you also need sambamba tool installed (version >= 0.2.6).

If you use Debian, you can download a package for your architecture from github downloads.

Otherwise, you need to install DMD compiler.

  • On Mac OS X you can install homebrew package manager, then install dmd easily with
    brew install dmd
  • On Arch Linux you can use pacman to install dmd
    pacman -S dmd libphobos
  • clone sambamba repository and compile the tool
    git clone --recursive https://github.com/lomereiter/sambamba.git
    cd sambamba/
    make
  • place the executable file build/sambamba to somewhere in your $PATH, for example:
    cp build/sambamba /usr/local/bin

Usage

    require 'bio-sambamba'

The API doc is online. For more code examples see the test files in the source tree.

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/lomereiter/bioruby-sambamba

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at #bio-sambamba

Copyright

Copyright (c) 2012 Artem Tarasov. See LICENSE.txt for further details.

Something went wrong with that request. Please try again.