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weird behaviour when region is of form 'chr' instead of 'chr:beg-end' #40

lomereiter opened this Issue Oct 7, 2012 · 0 comments


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lomereiter commented Oct 7, 2012

With one of files from 1000 Genomes, using index generated by Samtools, when I specify '20' as the region in sambamba view, it throws an exception, trying to read some non-existent BGZF block. However, if '20:1-100000000' is specified in command-line, everything is OK.

(Perhaps, has to do with some erroneous type conversions between size_t and uint... will look into that tomorrow)

@lomereiter lomereiter was assigned Oct 7, 2012

@lomereiter lomereiter closed this in 03eaa40 Oct 8, 2012

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