Skip to content
Labs content for 2017 & 2018 QMUL MSc Bioinformatics BIO782P (Stats & bioinformatics) module
HTML Other
  1. HTML 99.7%
  2. Other 0.3%
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
1206
1280
1608
1864
1932
Assessment 1_Minli_Github
Assign1_scrpits&datasets_JingwenLiu
Assignment 1 Friha Zafar
Assignment
FINAL STATS CW GIT
Fatma Stat Assignment 1 Github
Ishack M Mougamadou 150346599 BIO782P Statistics Assignment 1
Mahmuda_Bashir_170941022-Assignment_1
Stat Report - Lim/Stat Report - Lim
labs
lectures
people
.DS_Store
Qi,muyao(180103616) assessment1 script.R
README.md
course_outline.xlsx

README.md

QMUL-MSc-BIO782P-stats-bioinfo

Labs content for 2017 & 2018 QMUL MSc Bioinformatics BIO782P (Stats & Bioinformatics) module. These lectures and labs include content authored by Rob Knell (2016) where so marked.

Course overview

Day Date Lecture Lab Goals Assessment
1 Monday 5th November 2018 Introduction: Statistics and Bioinformatics (R. Knell, J. Parker) Introduction to R (R. Knell, J. Parker) Why bioinformatics is statistical; How to use R; Basic exploratory analyses (CWK1 5%) Simply plot data
2 Tuesday 6th November 2018 Basic statistics (R. Knell, J. Parker) Chi-squared, Student T (R. Knell, J. Parker) Simple summary measures (CWK1 5%) Mean; median; contingency tables; difference statistics and Cis
3 Weds 7th November 2018 ANOVA and LMs (R. Knell, J. Parker) ANOVA and LMs (R. Knell, J. Parker) ANOVA, regression (CWK1 20%) Anova, regression
4 Thursday 8th November 2018 General linear models (R. Knell, J. Parker) GLM I (R. Knell, J. Parker) GLMs, error, interactions (CWK1 20%) GLMs
5 Friday 9th November 2018 More GLMs: Selection, experimental design, assumptions (R. Knell, J. Parker) GLM II (R. Knell, J. Parker) Model selection (CWK1 50%) Appropriate selection, main assessment
6 Monday 12th November 2018 What is a model? NOTE: 1000-1100 Simulation; phylogenetics Modelling context (CWK2 50%) Simulation
7 Tuesday 13th November 2018 Beyond GLMs Models & simulation (Pt. II) Beyond GLMs in para space None
8 Wednesday 14th November 2018 Big data bioinformatics Regex; Group project Issues in big data (reproducibility; FDR; power/effect size; distributions) None
9 Thursday 15th November 2018 The toolbox Docker, grids and the cloud (pt. I) NOTE: 1230-1500 Crick Lecture: Michael Levine, Princeton (optional) NOTE: 1600, Crick Inst. Where to find more tools/resources. Architectures (CWK2 50%) Dockerfile
10 Friday 16th November 2018 Looking further Docker, grids and the cloud (pt. II); Open Help Session NOTE: 1300-1500 "My favourite package" symposium NOTE: 1600-1700, Queen's Building. Refreshments after. Wider context None / opportunity for troubleshooting
You can’t perform that action at this time.