Skip to content
pipeline for the analysis of small RNA data
Java Python Shell
Branch: miraligner
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Type Name Latest commit message Commit time
Failed to load latest commit information.
miraligner update with version 3.5 Jun 24, 2019
modules/miraligner update with version 3.5 Jun 24, 2019
validator update with version 3.5 Jun 24, 2019
.gitignore update with version 3.5 Jun 24, 2019
.gitmodules Allow mialigner alone Oct 27, 2015 update release link May 23, 2019


Please, be aware that the user friendly interface is desecrated. SeqBuster only keeps updated miraligner as an independent file.

Project Status: Active – The project has reached a stable, usable state and is being actively developed.

Read how to annotate miRNAs/isomiRs from fastq files in our documentation page.

Validators of the latest versions are here.

Some comparison between many tools here.


Click here


SeqBuster is a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. Pantano L, Estivill X, Martí E. Nucleic Acids Res. 2010 Mar;38(5):e34. Epub 2009 Dec 11.

See also

Other tools related to small RNA analysis.

  • R package isomiRs to visualize isomiRs and miRNA abundances in a group of samples (new)
  • seqcluster analyzes the rest of small RNAs and annotate to multiple databases in bed format (new)

The development of Seqbuster was partly funded by the EU Seventh Framework Programme [FP7/2007-2013, grant number 262055, ESGI].

You can’t perform that action at this time.