Lance Parsons lparsons

@lparsons

Thanks @martenson, looks good!

@lparsons

Just an FYI, this is not yet in the Main TS.

@lparsons

Thanks for the quick fix!

@lparsons
Cufflinks 2.1.1 download location has moved
@lparsons

So, after quite a bit of wrangling, I was able to "purge" one of the "package" repositories and then things started to work much better. However, t…

@lparsons

I agree @jmchilton. @bgruening, yes, I have tried that but it really only seems to automate the uninstall reinstall loop. I believe we have two ma…

@lparsons

@jmchilton Postgres

@lparsons

@martenson Oh, I see, I've done that, but that simply deletes files on disk (sometimes). There is no way to remove what I think are "duplicate" ent…

@lparsons

@martenson I'm not quite sure what you mean by 'clean uninstall' and 'clean install'. What sort of a process can I use to do that?

@lparsons

I believe the underlying issue is that Galaxy can get into a state where there are multiple records for the same toolshed repository version. I don…

@lparsons

@InitHello The uninstalled package_bowtie_2_2_4 shows up as "updates available". The initial reinstallation attempt generated an error message on t…

@lparsons

I'm not sure if this is an issue just for my test instance (which has lots of clutter due to this type of issue) or if it would affect instances th…

@lparsons

@bgruening I believe the problem is revision and not version. In my test instance of Galaxy (at latest_2014.10.06) the installed bowtie2 package sh…

@lparsons

I see that the toolshed repo package_bowtie_2_2_4 has been updated to revision 172979b6bf77, however, the repo bowtie2 still requires the older rev…

@lparsons

Excellent, thanks @martenson, I'll test again once the toolshed has been updated.

@lparsons

Excellent, I'll test again once the toolshed is updated.

@lparsons
freebayes installs dependency binary in wrong location
@lparsons
Bowtie2 precompiled dependency not executable after toolshed install
@lparsons
Bowtie2 precompiled dependency download 403 error
@lparsons
Bug in maxContigs parsing in pbreport.py