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  1. Parameter inference by fitting stochastic transmission models to both disease incidence time-series and pathogen phylogeny.

    C++ 3 2

  2. EpiGenR Public

    Inference from both epidemiological and genetic data. Functions generate input files for EpiGenMCMC and to visualise output.

    R 3 2

  3. Teaching material for MCMC class at HSPH

    R 2

  4. Data from Cholera outbreak in Yemen, 2017

    HTML 1

  5. GenBank Public

    R

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December 2021

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