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  1. EpiGenMCMC EpiGenMCMC Public

    Parameter inference by fitting stochastic transmission models to both disease incidence time-series and pathogen phylogeny.

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  2. EpiGenR EpiGenR Public

    Inference from both epidemiological and genetic data. Functions generate input files for EpiGenMCMC and to visualise output.

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  3. yemen-cholera-2017 yemen-cholera-2017 Public

    Data from Cholera outbreak in Yemen, 2017

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  4. mcmc-infectious-disease-epi mcmc-infectious-disease-epi Public

    Teaching material for MCMC class at HSPH

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  5. GenBank GenBank Public

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  6. lucymli.github.io lucymli.github.io Public

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