Reproducible research archive for "Nuclear segmentation in microscope cell images"
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papers/isbi-2009
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CITATION.txt
README.rst
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README.rst

This is the source code & data for the paper

Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms by Luis Pedro Coelho, Aabid Shariff, and Robert F. Murphy. DOI: 10.1109/ISBI.2009.5193098 PubMed Central (open access).

Data

Original data is in the data/ directory. The two subfolders gnf and ic100 contain the files that were manually generated. In the subfolder preprocessed-data, you will a processed version which may be easier to use.

These are labeled integer images: the value 0 corresponds to the background, 1 is the first cell, 2 the second cell, &c.

Citation

Full citation (use this if you use this code/dataset in a paper):

@inproceedings{Coelho2009,
    title = {Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms},
    author = {Coelho, Luis Pedro and Shariff, Aabid and Murphy, Robert F.},
    booktitle = {2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
    doi = {10.1109/ISBI.2009.5193098},
    isbn = {978-1-4244-3931-7},
    keywords = {segmentation},
    pages = {518--521},
    year = {2009},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5193098}
}