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Commits on May 23, 2013
  1. BLD Add Makefile

    authored
Commits on Jul 18, 2012
  1. BUG Handle bowtie output (12 fields)

    authored
    Last field has a meaning, but we ignore it.
  2. ENH Have sam-filter accept "-" as in/out

    authored
    Also, refactor to use Utils.hs
Commits on Jul 17, 2012
  1. RFCT Better code

    authored
    Remove ParBuffer: it was not complete
Commits on Jul 9, 2012
  1. BUG Update interface

    authored
Commits on Jun 22, 2012
  1. ENH Conver fastq sub-formats

    authored
  2. ENH Handle - correctly

    authored
    Otherwise, when redirecting on the shell, it can lead to unintuitive
    results. For example,
    
    embl-to-fasta input - >>file.fa
    
    will truncate the file!
  3. ENH Use a constant instead of function

    authored
    This might be correctly inlined
  4. ENH Compile embl-to-fasta

    authored
Commits on Jun 14, 2012
  1. ENH Show progress

    authored
  2. ENH idP is already available

    authored
  3. RFCT Use impure code for simplicity

    authored
    This could be done in the ST monad too, if purity is desired
  4. ENH Select fastq sub-format

    authored
Commits on Jun 8, 2012
  1. RFCT Use monadic interface to conduit

    authored
    This is simpler code
  2. ENH Update to newer conduit

    authored
Commits on Jun 5, 2012
Commits on Jun 4, 2012
Commits on Jun 1, 2012
  1. MIN Show as integer

    authored
  2. ENH sam-filter utility

    authored
  3. ENH Better error message

    authored
  4. MIN export readSamLine

    authored
  5. ENH Trim based on qualities

    authored
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