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Organizations

@dib-lab @DataSounds @Lasanha

Pinned repositories

  1. dib-lab/sourmash

    Compute and compare MinHash signatures for DNA data sets.

    Standard ML 121 27

  2. sourmash-rust

    Rust implementation of sourmash core functionality

    Rust 7 1

  3. 2018-python-rust

    This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

    11

  4. dib-lab/khmer

    In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 542 283

  5. dib-lab/screed

    a simple read-only sequence database, designed for short reads

    Python 42 26

529 contributions in the last year

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Contribution activity

December 2018

Created a pull request in dib-lab/sourmash that received 2 comments

[MRG] Reorganize travis around stages

Reorganize travis builds around build stages and bring back MacOS as a target. Also uses joerick/cibuildwheel to coordinate wheel building Example …

+69 −52 2 comments

Created an issue in dib-lab/sourmash that received 2 comments

Add a remove method to minhashes

During a gather run @taylorreiter and I noticed the build_new_signature taking a long time, and when I checked the implementation I saw it is creat…

2 comments

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