Metalign: Efficient alignment-based metagenomic profiling via containment min hash
Version 0.9.1 | December 10, 2019
Metalign is a method for estimating the taxonomic composition and relative abundances of organisms in a metagenomic sample based on whole-genome shotgun sequencing reads.
For instructions on usage, please see the wiki: https://github.com/nlapier2/Metalign/wiki
Once you've completed installation, a quick example (with instructions) is available in the example/ folder.
If you use our software, please cite the paper, which can be found here: (temp)