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Metalign: efficient alignment-based metagenomic profiling via containment min hash
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README.md

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

Version 0.9.1 | December 10, 2019

Metalign is a method for estimating the taxonomic composition and relative abundances of organisms in a metagenomic sample based on whole-genome shotgun sequencing reads.

For instructions on usage, please see the wiki: https://github.com/nlapier2/Metalign/wiki

Once you've completed installation, a quick example (with instructions) is available in the example/ folder.

If you use our software, please cite the paper, which can be found here: (temp)

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