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envs
plots
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Makefile
README.md
Snakefile
environment.yml

README.md

Computational Environment

All processing and analysis scripts were performed using the conda environment specified in environment.yml. To build and activate this environment run:

conda env create --force --file environment.yml

conda activate sourmash_resources

Resources (for master)

command s hⓂ️s max_rss max_vms max_uss max_pss io_in io_out mean_load
compute 199.2700 0:03:19 34.78 70.74 30.35 30.47 0.00 0.00 98.26
search 22.6099 0:00:22 233.12 268.14 228.82 228.94 0.00 2465.77 69.00
gather 193.7676 0:03:13 2085.33 3390.10 2081.24 2081.39 0.00 1832.99 85.81
lca_search 75.9855 0:01:15 4147.04 4182.51 4143.23 4143.35 0.00 0.00 60.36
lca_gather 81.5932 0:01:21 4522.37 5925.67 4517.97 4518.12 0.00 0.00 93.48
compare 5.0422 0:00:05 61.66 1366.43 57.27 57.42 0.00 0.00 90.61
index 232.9069 0:03:52 539.66 575.04 535.39 535.50 0.03 1296.12 36.77

Plots

compute

index

search

gather

lca search

lca gather

compare

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