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Organizations

@dib-lab @DataSounds @Lasanha

Pinned repositories

  1. dib-lab/sourmash

    Compute and compare MinHash signatures for DNA data sets.

    Standard ML 121 26

  2. dib-lab/khmer

    In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 546 282

  3. 2018-python-rust

    This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

    13

  4. dib-lab/screed

    a simple read-only sequence database, designed for short reads

    Python 42 26

Contribution activity

December 2018

Created a pull request in dib-lab/sourmash that received 6 comments

[MRG] Bring in rust codebase from luizirber/sourmash-rust

This is a split from #424. It contains the Rust code, and #424 now contains the C++ replacements. Checklist Is it mergeable? make test Did it pa…

+4,836 −25 6 comments

Created an issue in dib-lab/sourmash that received 3 comments

Add a remove method to minhashes

During a gather run @taylorreiter and I noticed the build_new_signature taking a long time, and when I checked the implementation I saw it is creat…

3 comments

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