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Organizations

@dib-lab @DataSounds @Lasanha

Pinned repositories

  1. dib-lab/sourmash

    Compute and compare MinHash signatures for DNA data sets.

    Standard ML 122 26

  2. dib-lab/khmer

    In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 546 281

  3. 2018-python-rust

    This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

    13

  4. dib-lab/screed

    a simple read-only sequence database, designed for short reads

    Python 42 26

19 contributions in 2019

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Mon Wed Fri
Activity overview
Contributed to dib-lab/sourmash, bioconda/bioconda-recipes, luizirber/blog and 1 other repository
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Contribution activity

January 2019

Created a pull request in dib-lab/sourmash that received 3 comments

[MRG] gather optimizations

A couple of fixes for gather perf problems don't recalculate scaled query minhash everytime we reach a leaf in the SBT add a remove_many method to…

+87 −19 3 comments

Created an issue in dib-lab/sourmash that received 1 comment

Better conceptual definition on minhash/signature/query

I think we should separate query, signature and minhash better around the codebase. It's all pretty entangled, but they are different things! MinH…

1 comment

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