Create your own GitHub profile
Sign up for your own profile on GitHub, the best place to host code, manage projects, and build software alongside 28 million developers.
Developer Program Member
Compute and compare MinHash signatures for DNA data sets.
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
a simple read-only sequence database, designed for short reads
A couple of fixes for gather perf problems
don't recalculate scaled query minhash everytime we reach a leaf in the SBT
remove_many method to…
I think we should separate
minhash better around the codebase.
It's all pretty entangled, but they are different things!
Press h to open a hovercard with more details.