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@dib-lab @DataSounds @Lasanha


  1. Compute and compare MinHash signatures for DNA data sets.

    Standard ML 130 26

  2. In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 553 284

  3. This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.


  4. a simple read-only sequence database, designed for short reads

    Python 42 27

89 contributions in 2019

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Mon Wed Fri
Activity overview
Contributed to luizirber/ukhs, dib-lab/sourmash, camillescott/boink and 5 other repositories

Contribution activity

March 2019

Created a pull request in bioconda/bioconda-recipes that received 4 comments

Bump khmer build number to trigger py37 package

ℹ️ Bioconda has finished the GCC7 migration. If you are dealing with C/C++ or Python package it can be that you need to rebuild other dependent pac…

+1 −1 4 comments

Created an issue in luizirber/ukhs that received 1 comment

Compare bbhash crate with rust-boomphf

I ended up wrapping BBHash into two crates (bbhash-sys and bbhash) because I wanted to maintain compatibility with C/C++ codebases using it. But if r…

1 comment

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