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@dib-lab @DataSounds @Lasanha @pyOpenSci
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Pinned

  1. Compute and compare MinHash signatures for DNA data sets.

    Standard ML 154 34

  2. In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 585 294

  3. This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

    16 1

  4. a simple read-only sequence database, designed for short reads

    Python 44 28

396 contributions in 2019

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Mon Wed Fri

Contribution activity

November 2019

Created a pull request in dib-lab/MQF that received 13 comments

Calling MQF from Rust

This uses bindgen to generate Rust bindings from the gqf.h header. Slowly adding more functions, but this initial PoC is based on the "simple count…

+414 −16 13 comments

Created an issue in bioconda/bioconda-recipes that received 2 comments

Recommendations for dealing with a pre release?

Hi, sourmash is in the process of merging a PR replacing C++ with Rust. We will signal this to user by releasing version 3.0, but we want to do rel…

2 comments
1 contribution in private repositories Nov 14

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