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Code

Code for health impact assessments from air pollution exposure

Functions
  • Import numpy arrays (import_npz.py).
  • Find index within array nearest to a given value (find_nearest.py).
  • Create the ozone metric used for health impact assessments (create_o3_metric.py).
  • GEMM NCD+LRI for long-term PM2.5 exposure (calc_hia_gemm_ncdlri.py).
    • Variant using Numba (calc_hia_gemm_ncdlri_numba.py).
  • GEMM 5COD for long-term PM2.5 exposure (calc_hia_gemm_5cod.py).
  • GBD2017/2019 for long-term PM2.5 exposure (calc_hia_gbd2017_pm25.py, calc_hia_gbd2019_pm25.py).
  • GBD2017/2019 for long-term O3 exposure (calc_hia_gbd2017_o3.py, calc_hia_gbd2019_o3.py).
  • Create global arrays of GBD2019 baseline mortality and population age (create_arrays_gbd2019_baseline_mortality_population.py/bash).
  • Test calculation for GBD2019 (hia_gbd2019.py/bash).
  • Cut an array by a shapefile (cutshapefile.py).
  • Cut the health impact assessment arrays by shapefiles (shapefile_hia.py).
Examples
  • Regridding to a global grid (example_regridding.py).
  • Application of cutting an array by a shapefile (example_crop_array_to_shapefile.ipynb).
  • Plotting concentrations and calculating exposure over an area (example_popweighted_exposure.ipynb).
  • Health impact assessment for long-term PM2.5 and O3 exposures using GBD2017 exposure-outcome associations (example_hia_gbd2017.py).
  • Health impact assessment for long-term PM2.5 exposure using the GEMM NCD+LRI exposure-outcome associations (example_hia_gbd2017.py, health_impact_assessment_china.py, health_impact_assessment_global.py).
  • Cropping health impact assessments by shapefile (example_hia_split_shapefile.py).
  • Health impact assessment for short-term PM2.5 exposure (example_hia_shortterm.py).

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Code for health impact assessments from air pollution exposure

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