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GOterm
advanceAnalysis
constructExpMx
denoise
diffexp
fast_mapping_order
01.QC_mapping.sh
02.constructExpMx.sh
03.diffexp.sh
README.md
diffexp.DESeq2.R
diffexp.edgeR.R
diffexp.plots.R
diffexp.wilcox.R
enrichR.R

README.md

Dateset: exRNA-seq generated by lulab; example files were gerented by random sampling 1,000,000 reads

Date: Apr 11, 2018

Maintainer: Yang Eric Li

Description: Plasma samples were collected from HCC patients (befroe surgery) and normal people.

location: cnode:/BioII/lulab_b/shared/projects/exRNA/hcc_examples/

Metatable:

Column Description
Sample_ID: the patient sample were named as xxxxx-B (before surgery) and xxxxx-A (after surgery), respectively
Stage: the development stage of HCC, from level A to C
Sex: M / F
Age: Age by sampling time
DNase1: treat with DNase or not
Spike.in: used or not
Used.plasma.ml: the volume of used plasma
RNA.conc.ng.μ.l: the concentration of RNA
RNA.mass.ng: the quality of used RNA
Seq_date: the date of getting sequencing data
notes: other informations
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