George_Mullinix_etal_2021

• Post-Measurement Analysis Source Code

Structure

• Requires coral measurement CSV file:
• correlation_bootstrap: Runner methods for calculating correlations via nonparametric bootstrap
  • Depends on linboot, see correlation_bootstrap/Readme.md
• random_forest: Random forest analysis methods
• docker: Container recipes and runners

Usage

• See the documentation in each directory for details.
• Notes:
  • correlation_bootstrap requires nvidia-docker2 support, which is currently unavailable outside of linux. As such, the data have been calculated and stored on Dryad:
  • random_forest/RF_Bottom_Up_Assembly.R takes a long time to complete.