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add_ident Last updated Oct 2, 2015
align_pair_seq Last updated Oct 2, 2015
align_seq Last updated Oct 2, 2015
analyze_assembly Last updated Oct 2, 2015
analyze_bed Last updated Oct 2, 2015
analyze_gc Last updated Oct 2, 2015
analyze_scores Last updated Oct 2, 2015
analyze_seq Last updated Oct 2, 2015
analyze_snp Last updated Oct 2, 2015
analyze_tags Last updated Oct 2, 2015
analyze_vals Last updated Oct 2, 2015
assemble_contigs Last updated Oct 2, 2015
assemble_pairs Last updated Oct 2, 2015
assemble_seq_idba Last updated Oct 2, 2015
assemble_seq_ray Last updated Oct 2, 2015
assemble_seq_velvet Last updated Oct 2, 2015
assemble_tag_contigs Last updated Oct 2, 2015
BGB_delete_track Last updated Oct 2, 2015
BGB_intersect Last updated Oct 2, 2015
BGB_list Last updated Oct 2, 2015
BGB_read_track Last updated Oct 2, 2015
BGB_upload Last updated Oct 2, 2015
bin_vals Last updated Oct 2, 2015
BiopiecesGenomeBrowser Last updated Oct 1, 2015
bioscript Last updated Oct 2, 2015
biostat Last updated Oct 2, 2015
blast_seq Last updated Oct 2, 2015
blast_seq_pair Last updated Oct 2, 2015
blat_seq Last updated Oct 2, 2015
bowtie2_seq Last updated Oct 2, 2015
bowtie_seq Last updated Oct 2, 2015
bwa_seq Last updated Oct 2, 2015
calc_bit_scores Last updated Oct 2, 2015
calc_density Last updated Oct 2, 2015
calc_fixedstep Last updated Oct 2, 2015
calc_N50 Last updated Oct 2, 2015
classify_taxonomy Last updated Oct 2, 2015
clip_adaptor Last updated Oct 2, 2015
clip_seq Last updated Oct 2, 2015
complement_seq Last updated Oct 2, 2015
compute Last updated Oct 2, 2015
count_records Last updated Oct 2, 2015
count_vals Last updated Oct 2, 2015
create_blast_index Last updated Oct 2, 2015
create_bowtie2_index Last updated Oct 2, 2015
create_bowtie_index Last updated Oct 2, 2015
create_bwa_index Last updated Oct 2, 2015
create_fixedstep_index Last updated Oct 2, 2015
create_seq_index Last updated Oct 2, 2015
create_vmatch_index Last updated Oct 2, 2015
create_weight_matrix Last updated Oct 2, 2015
denoise_seq Last updated Oct 2, 2015
digest_seq Last updated Oct 2, 2015
duplicate_record Last updated Oct 2, 2015
embl_index Last updated Oct 2, 2015
extract_seq Last updated Oct 2, 2015
FAQ Last updated Nov 17, 2015
find_adaptor Last updated Oct 2, 2015
find_barcodes Last updated Oct 2, 2015
find_gaps Last updated Oct 2, 2015
find_genes Last updated Oct 2, 2015
find_homopolymers Last updated Oct 2, 2015
find_orfs Last updated Oct 2, 2015
find_orphans Last updated Oct 2, 2015
find_pairs Last updated Oct 2, 2015
find_SNPs Last updated Oct 2, 2015
findsim_seq Last updated Oct 2, 2015
flip_tab Last updated Oct 2, 2015
fold_seq Last updated Oct 2, 2015
format_genome Last updated Oct 2, 2015
get_embl_entry Last updated Oct 2, 2015
get_fixedstep Last updated Oct 2, 2015
get_genome_align Last updated Oct 2, 2015
get_genome_phastcons Last updated Oct 2, 2015
get_genome_seq Last updated Oct 2, 2015
get_seq Last updated Oct 2, 2015
grab Last updated Oct 2, 2015
head_records Last updated Oct 2, 2015
hmmer_seq Last updated Oct 2, 2015
HowTo Last updated Oct 2, 2015
indel_seq Last updated Oct 2, 2015
index_vals Last updated Oct 2, 2015
Installation Last updated Apr 14, 2016
intersect_records Last updated Oct 2, 2015
Introduction Last updated Oct 2, 2015
invert_align Last updated Oct 2, 2015
join_seq Last updated Oct 2, 2015
KissFormat Last updated Oct 2, 2015
kmer_freq Last updated Oct 2, 2015
length_seq Last updated Oct 2, 2015
length_vals Last updated Oct 2, 2015
list_biopieces Last updated Oct 2, 2015
list_genomes Last updated Oct 2, 2015
list_mysql_databases Last updated Oct 2, 2015
lowercase_seq Last updated Oct 2, 2015
mask_seq Last updated Oct 2, 2015
match_seq Last updated Oct 2, 2015
mate_pair_dist Last updated Oct 2, 2015
max_vals Last updated Oct 2, 2015
mean_scores Last updated Oct 2, 2015
mean_vals Last updated Oct 2, 2015
median_vals Last updated Oct 2, 2015
merge_pair_seq Last updated Oct 2, 2015
merge_records Last updated Oct 2, 2015
merge_vals Last updated Oct 2, 2015
min_vals Last updated Oct 2, 2015
mutate_seq Last updated Oct 2, 2015
oligo_freq Last updated Oct 2, 2015
order_pairs Last updated Oct 2, 2015
patscan_seq Last updated Oct 2, 2015
pcr_seq Last updated Oct 2, 2015
plot_chrdist Last updated Oct 2, 2015
plot_distribution Last updated Oct 2, 2015
plot_histogram Last updated Oct 2, 2015
plot_karyogram Last updated Oct 2, 2015
plot_lendist Last updated Oct 2, 2015
plot_lines Last updated Oct 2, 2015
plot_matches Last updated Oct 2, 2015
plot_nucleotide_distribution Last updated Oct 2, 2015
plot_phastcons_profiles Last updated Oct 2, 2015
plot_scores Last updated Oct 2, 2015
plot_seqlogo Last updated Oct 2, 2015
print_wiki Last updated Oct 2, 2015
progress_meter Last updated Oct 2, 2015
PublicationsUsingBiopieces Last updated Oct 1, 2015
random_records Last updated Oct 2, 2015
read_2bit Last updated Oct 2, 2015
read_454 Last updated Oct 2, 2015
read_ace Last updated Oct 2, 2015
read_bed Last updated Oct 2, 2015
read_blast_tab Last updated Oct 2, 2015
read_embl Last updated Oct 2, 2015
read_fasta Last updated Oct 2, 2015
read_fastq Last updated Oct 2, 2015
read_fixedstep Last updated Oct 2, 2015
read_genbank Last updated Oct 2, 2015
read_gff Last updated Oct 2, 2015
read_kiss Last updated Oct 2, 2015
read_mysql Last updated Oct 2, 2015
read_pdb Last updated Oct 2, 2015
read_psl Last updated Oct 2, 2015
read_sam Last updated Oct 2, 2015
read_sff Last updated Oct 2, 2015
read_soft Last updated Oct 2, 2015
read_solid Last updated Oct 2, 2015
read_stockholm Last updated Oct 2, 2015
read_tab Last updated Oct 2, 2015
read_ucsc_config Last updated Oct 2, 2015
remove_adaptor Last updated Oct 2, 2015
remove_indel_columns Last updated Oct 2, 2015
remove_indels Last updated Oct 2, 2015
remove_keys Last updated Oct 2, 2015
remove_mysql_tables Last updated Oct 2, 2015
remove_primers Last updated Oct 2, 2015
remove_ucsc_tracks Last updated Oct 2, 2015
rename_keys Last updated Oct 2, 2015
replace_vals Last updated Oct 2, 2015
rescan_seq Last updated Oct 2, 2015
reverse_seq Last updated Oct 2, 2015
scores_to_dec Last updated Oct 2, 2015
shred_seq Last updated Oct 2, 2015
shuffle_records Last updated Oct 2, 2015
shuffle_seq Last updated Oct 2, 2015
slice_align Last updated Oct 2, 2015
soap_seq Last updated Oct 2, 2015
sort_records Last updated Oct 2, 2015
split_bed Last updated Oct 2, 2015
split_pair_seq Last updated Oct 2, 2015
split_seq Last updated Oct 2, 2015
split_vals Last updated Oct 2, 2015
substitute_vals Last updated Oct 2, 2015
sum_vals Last updated Oct 2, 2015
swapcase_seq Last updated Oct 2, 2015
tile_seq Last updated Oct 2, 2015
translate_seq Last updated Oct 2, 2015
transliterate_seq Last updated Oct 2, 2015
transliterate_vals Last updated Oct 2, 2015
trim_seq Last updated Oct 2, 2015
uchime_seq Last updated Oct 1, 2015
uclust_seq Last updated Oct 2, 2015
uniq_seq Last updated Oct 2, 2015
uniq_vals Last updated Oct 2, 2015
upload_to_ucsc Last updated Oct 2, 2015
uppercase_seq Last updated Oct 2, 2015
usearch_seq Last updated Oct 2, 2015
vmatch_seq Last updated Oct 2, 2015
Wiki Last updated Nov 17, 2015
write_2bit Last updated Oct 2, 2015
write_454 Last updated Oct 2, 2015
write_align Last updated Oct 2, 2015
write_bed Last updated Oct 2, 2015
write_blast Last updated Oct 2, 2015
write_fasta Last updated Oct 2, 2015
write_fasta_files Last updated Oct 2, 2015
write_fastq Last updated Oct 2, 2015
write_fastq_files Last updated Oct 2, 2015
write_fixedstep Last updated Oct 2, 2015
write_gff Last updated Oct 2, 2015
write_kiss Last updated Oct 2, 2015
write_mysql Last updated Oct 2, 2015
write_psl Last updated Oct 2, 2015
write_sam Last updated Oct 2, 2015
write_solid Last updated Oct 2, 2015
write_tab Last updated Oct 2, 2015
write_ucsc_config Last updated Oct 2, 2015