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Volumetric parameterization of the placenta to a flattened template
MATLAB
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src Correct bug in saving binary image as NIFTI Mar 15, 2019
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README.md

placenta-flattening

A MATLAB algorithm for volumetric mesh parameterization. Developed for mapping a placenta segmentation derived from an MRI image to a flattened template for visualization. The code can work on NIFTI images or MATLAB matrices containing imaging information.

Requirements

Add the MATLAB packages to the working path.

Usage

main(grayImage, segImage): input a grayscale MRI image and the corresponding binary segmentation, where voxels labeled '1' correspond to the placenta. The inputs grayImage, segImage can either be full path locations of NIFTI image files, or image matrices. The script outputs the flattened meshes and images containing the mapped intensities.

Development

Please contact Mazdak Abulnaga, abulnaga@mit.edu.

Paper

In progress.

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