Analysis for our 2018 Immunity paper (cell atlas of mouse thymus development).
Implementation of the atacTFAP analysis in our DE screen paper (April 2018 Cell Reports)
Code to reproduce our analyses from the definitive endoderm screen, April 2019 Cell Reports
A set of general purpose tools for single cell analysis. Upgrade of thymusatlastools, also available on our Github.
Bubble grid plots for single-cell omics data
Grid and ggplot2 based visualization for biological data
R toolkit for single cell genomics
R package to accompany our recent Immunity paper on the mouse thymus developmental cell atlas.
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