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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

Pinned

  1. TriPath TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 64 4

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 191 25

  3. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 152 11

  4. CLAM CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 914 318

  5. HIPT HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 465 83

  6. PathomicFusion PathomicFusion Public

    Fusing Histology and Genomics via Deep Learning - IEEE TMI

    Jupyter Notebook 254 77

Repositories

Showing 10 of 25 repositories
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    Jupyter Notebook 24 1 0 0 Updated May 21, 2024
  • TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    Python 27 0 0 0 Updated May 21, 2024
  • Patch-GCN Public

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    Python 103 GPL-3.0 29 5 1 Updated May 14, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 64 4 0 0 Updated May 10, 2024
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 914 GPL-3.0 318 10 4 Updated Apr 29, 2024
  • CPATH_demographics Public

    Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

    Python 12 2 0 0 Updated Apr 29, 2024
  • JavaScript 0 MIT 0 0 0 Updated Apr 7, 2024
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 152 10 3 0 Updated Apr 6, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 191 25 11 1 Updated Mar 29, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    Python 59 2 1 0 Updated Mar 25, 2024

People

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