This project tries to find the origins of parasitism with the help of GloBIs interaction database
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analysis
counting
documents
tagging
visualisation
weinstein
.gitignore
README.md
build_data.sh
build_freeliving_source.js
build_freeliving_target.js
build_parasites_source.js
build_parasites_target.js
create_cols.js
edgesimport_otl.js
find_origins.js
nodesimport_otl.js
taxonomic_majority_censoring.js
write_pis.js

README.md

GloBIs parasites

Here is the workflow to reproduce the current findings:

1. connect to the VM thats running arangoDB:

ssh h -L 127.0.0.1:8529:127.0.0.1:8529 -p 15350 -q

2. Setup arangoDB and node.v8 and disable arangos authentication (sudo nano etc/arangodb3/arangod.conf and restart arangodb with sudo service arangodb3 restart afterwards.)

3. Run the data-building script:

bash build_data.sh

After that you can start scripts inside visualisation to generate the sunbursts. The generated tables are stored in analysis/generated_tables

CC This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.